Fitness for 5 genes in Enterobacter sp. TBS_079

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500 ntMPMX20_04411 and MPMX20_04412 are separated by 43 nucleotidesMPMX20_04412 and MPMX20_04413 are separated by 226 nucleotidesMPMX20_04413 and MPMX20_04414 are separated by 159 nucleotidesMPMX20_04414 and MPMX20_04415 are separated by 119 nucleotides MPMX20_04411: MPMX20_04411 - 2-dehydro-3-deoxygluconokinase, at 4,604,769 to 4,605,698 _04411 MPMX20_04412: MPMX20_04412 - Protein YhjJ, at 4,605,742 to 4,607,235 _04412 MPMX20_04413: MPMX20_04413 - Aerobic C4-dicarboxylate transport protein, at 4,607,462 to 4,608,748 _04413 MPMX20_04414: MPMX20_04414 - putative cyclic di-GMP phosphodiesterase PdeK, at 4,608,908 to 4,610,914 _04414 MPMX20_04415: MPMX20_04415 - Cellulose synthase operon protein C, at 4,611,034 to 4,614,516 _04415
Group Condition MPMX20_04411 MPMX20_04412 MPMX20_04413 MPMX20_04414 MPMX20_04415
carbon source succinate (C) -0.1 -1.4 -4.5 -0.6 +0.5
carbon source Fumarate (C) -0.1 -1.7 -4.2 -0.2 +0.6
carbon source a-Ketoglutaric (C) +0.0 -1.1 -2.5 -0.5 +0.1
carbon source L-Malic (C) +0.1 -1.4 -1.9 -0.1 +0.1
carbon source L-Aspartic Acid (C) -0.2 -1.0 -1.6 -0.4 +0.1
carbon source D,L-Malic Acid (C) -0.1 -0.5 -2.2 +0.1 +0.2
carbon source L-Asparagine (C) -0.0 -0.8 -0.6 -0.6 -0.0
carbon source D-Galacturonic Acid (C) -1.1 -0.4 -0.3 -0.2 +0.0
carbon source D-Glucuronic Acid (C) -0.8 -0.5 -0.2 -0.4 -0.0
motility; outer cut Motility test in 1X LB; 1 day; outer cut; 0.3% agar -0.2 -1.3 -0.1 -0.1 -0.3
carbon source D-Alanine (C) +0.1 -0.8 +0.0 -0.9 -0.1
carbon source L-Proline (C) +0.0 -1.0 -0.2 -0.4 +0.1
carbon source D-Lactate (C) +0.4 -1.1 -0.1 -0.4 -0.2
mixed community 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030 -0.1 +0.2 -0.9 -0.5 -0.1
carbon source L-Glutamic (C) +0.2 -0.9 -0.1 -0.4 +0.1
mixed community M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 +0.3 -0.4 -0.9 +0.1 +0.2
mixed community AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.01 +0.2 +0.2 -0.1 +0.2 -1.2
mixed community 1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct -0.4 +0.5 -0.5 -0.3 +0.1
mixed community TSB plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.2 +0.6 -0.4 -0.5 +0.2
mixed community M9 plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct -0.3 +0.5 +0.6 -0.7 -0.3
mixed community TSB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.4 +0.6 -0.5 -0.0 +0.3
mixed community TSB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct -0.3 +0.9 -0.3 -0.3 +0.2
carbon source Glycerol (C) +0.6 -0.5 +0.4 -0.1 +0.1
mixed community M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.6 +0.3 +0.5 -0.4 +0.8
mixed community TSB plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.4 +1.1 +0.2 -0.3 +0.3
mixed community TSB plate, Mixed culture; Bacillus subtilis TBS_111 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.3 +1.0 -0.1 -0.0 +0.8
mixed community TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.0 +0.6 -0.3 +0.5 +0.9
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 +0.1 +0.0 +1.7 -0.1 +0.2
carbon source Itaconic Acid (C) +0.2 +0.1 +1.7 -0.0 +0.1
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 +0.4 +0.8 +2.5 -0.1 +0.3
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