Fitness for 5 genes in Enterobacter sp. TBS_079

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500 ntMPMX20_04062 and MPMX20_04063 are separated by 7 nucleotidesMPMX20_04063 and MPMX20_04064 are separated by 89 nucleotidesMPMX20_04064 and MPMX20_04065 are separated by 45 nucleotidesMPMX20_04065 and MPMX20_04066 are separated by 142 nucleotides MPMX20_04062: MPMX20_04062 - putative protease YhbU, at 4,258,185 to 4,259,180 _04062 MPMX20_04063: MPMX20_04063 - hypothetical protein, at 4,259,188 to 4,260,066 _04063 MPMX20_04064: MPMX20_04064 - hypothetical protein, at 4,260,156 to 4,261,163 _04064 MPMX20_04065: MPMX20_04065 - Tryptophan-specific transport protein, at 4,261,209 to 4,262,453 _04065 MPMX20_04066: MPMX20_04066 - ATP-dependent RNA helicase DeaD, at 4,262,596 to 4,264,500 _04066
Group Condition MPMX20_04062 MPMX20_04063 MPMX20_04064 MPMX20_04065 MPMX20_04066
nitrogen source D-Salicin (N) -0.5 -0.0 -0.7 -0.9 -4.5
mixed community M9 plate, 1:1 coculture with Paenibacillus lautus TBS_090 -0.5 +0.2 -0.2 -0.4 -3.6
mixed community AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01 +0.0 +0.4 -0.6 -0.0 -3.9
mixed community AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001 +0.2 +0.2 -0.7 -0.2 -3.6
mixed community AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.01 -0.1 -0.1 -0.3 +0.0 -3.4
mixed community TSB plate, 1:1 coculture with Paenibacillus lautus TBS_090 -0.0 -0.1 -0.2 -0.6 -2.3
nitrogen source L-Methionine (N) +0.1 +0.2 +0.2 +0.4 -3.8
carbon source Cytosine (C) +0.3 -0.0 -0.0 -0.0 -2.7
nitrogen source Adenine (N) -0.3 +0.1 -0.2 +0.1 -2.0
nitrogen source D-Tagatose (N) -0.1 +0.0 -0.1 +0.1 -2.1
nitrogen source Gelatin (N) +0.1 -0.3 -0.2 -0.1 -1.6
nitrogen source L-Tryptophan (N) +0.1 -0.3 +0.0 -0.0 -1.8
carbon source D-Glucose-6-Phosphate (C) -0.1 +0.1 +0.2 +0.2 -2.3
mixed community M9 plate, 1:1 coculture with Agromyces sp. SAI_196 -0.7 +0.0 +0.1 -1.2 +0.3
mixed community TSB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.0 -0.5 +0.5 -0.3 -1.3
carbon source 4-Hydroxybenzoic Acid (C) +0.2 +0.4 +0.5 +0.1 -2.4
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 -0.5 -0.8 -0.2 -0.5 +1.0
nitrogen source Glycine (N) +0.1 +0.3 +0.2 +0.3 -1.8
carbon source L-Lactate (C) +0.7 +0.1 +0.3 +0.1 -1.7
mixed community TSB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.2 +0.2 +0.7 -0.5 -0.6
mixed community 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010 +0.5 +0.4 +0.1 -0.2 -1.1
mixed community 1X LB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct +0.5 +0.3 +0.1 -0.4 -0.9
mixed community M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.3 -0.3 -0.2 -0.4 +1.0
mixed community M9 plate, 1:1 coculture with Rhodococcus aetherivorans MH2 +0.3 -0.1 +0.0 -0.3 +2.0
mixed community 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.4 +1.0 +0.7 +0.3 +0.3
mixed community M9 plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct +0.6 -0.1 +0.1 -0.4 +1.7
carbon source succinate (C) +0.3 +0.4 -0.1 +0.1 +1.5
carbon source D-Lactate (C) -0.0 +0.4 +0.6 +0.3 +1.3
mixed community 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 -0.4 -0.3 -0.1 -0.1 +4.4
mixed community TSB plate, 1:1 coculture with Bacillus megaterium TBS_037 -0.1 +0.1 +0.1 -0.1 +3.8
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