Fitness for 5 genes in Enterobacter sp. TBS_079

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500 ntMPMX20_04038 and MPMX20_04039 are separated by 251 nucleotidesMPMX20_04039 and MPMX20_04040 are separated by 19 nucleotidesMPMX20_04040 and MPMX20_04041 are separated by 10 nucleotidesMPMX20_04041 and MPMX20_04042 overlap by 11 nucleotides MPMX20_04038: MPMX20_04038 - Glucitol operon repressor, at 4,235,880 to 4,236,689 _04038 MPMX20_04039: MPMX20_04039 - D-tagatose-1,6-bisphosphate aldolase subunit KbaZ, at 4,236,941 to 4,238,236 _04039 MPMX20_04040: MPMX20_04040 - PTS system fructose-specific EIIB component, at 4,238,256 to 4,238,729 _04040 MPMX20_04041: MPMX20_04041 - N-acetylgalactosamine permease IIC component 1, at 4,238,740 to 4,239,519 _04041 MPMX20_04042: MPMX20_04042 - PTS system mannose-specific EIID component, at 4,239,509 to 4,240,387 _04042
Group Condition MPMX20_04038 MPMX20_04039 MPMX20_04040 MPMX20_04041 MPMX20_04042
carbon source D-Lactate (C) -3.7 +0.1 -0.7 -0.1 -0.2
carbon source L-Proline (C) -4.5 +0.1 +0.2 +0.0 -0.0
carbon source Glucuronamide (C) -3.0 +0.0 -0.6 -0.2 +0.1
carbon source succinate (C) -3.3 -0.0 +0.1 -0.4 +0.1
carbon source L-Asparagine (C) -3.3 +0.0 +0.2 -0.2 -0.0
carbon source Fumarate (C) -3.4 +0.1 +0.3 -0.1 +0.0
carbon source L-Aspartic Acid (C) -3.0 +0.1 +0.5 -0.5 +0.0
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 -2.8 +0.0 +0.4 -0.2 -0.2
mixed community TSB plate, 1:1 coculture with Paenibacillus lautus TBS_090 -1.4 +0.3 -1.2 -0.6 +0.2
mixed community AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001 -1.9 +0.1 -1.4 +0.4 +0.3
supernatant mutant library grown in Supernatant; Inquilinus sp. 005-A5 grown in LB -3.3 +0.1 +0.5 +0.2 +0.1
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 -3.0 -0.1 +0.5 +0.3 +0.0
nitrogen source D-Tagatose (N) +0.7 -0.1 -2.1 -0.7 -0.1
carbon source Adenosine (C) -2.4 +0.0 +0.3 -0.3 +0.1
carbon source D-Alanine (C) -2.8 +0.0 +0.1 +0.4 +0.1
carbon source D-Xylose (C) -2.1 +0.0 +0.4 -0.5 +0.1
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 -3.0 -0.0 +0.5 +0.4 +0.0
mixed community TSB plate, Mixed culture; Bacillus subtilis TBS_111 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.9 -0.5 +0.6 -0.9 -0.3
carbon source Beta-Lactose (C) -2.5 +0.2 +0.5 -0.2 +0.1
carbon source L-Glutamic (C) -2.6 -0.0 +0.5 +0.1 +0.2
carbon source Glycerol (C) -2.4 +0.0 -0.1 +0.4 +0.2
mixed community TSB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -1.7 -0.1 -0.7 +1.1 -0.2
mixed community 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 -0.7 +0.3 -1.7 +0.4 +0.2
supernatant mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB -1.9 -0.4 +0.7 +0.2 +0.1
carbon source L-Malic (C) -2.1 +0.3 +0.4 +0.2 +0.2
carbon source L-Arginine (C) -2.1 +0.1 +0.5 +0.7 -0.1
carbon source D-Maltose (C) -1.8 +0.2 +1.1 -0.0 +0.1
mixed community TSB plate, Mixed culture; Bacillus megaterium TBS_053 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -1.5 -0.1 +1.9 -0.1 -0.2
mixed community TSB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -1.6 -0.1 +0.2 +1.2 +0.3
mixed community TSB plate, 1:1 coculture with Bacillus megaterium TBS_037 -1.3 +0.2 +1.4 +0.5 +0.0
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