Fitness for 5 genes in Enterobacter sp. TBS_079

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500 ntMPMX20_03460 and MPMX20_03461 are separated by 431 nucleotidesMPMX20_03461 and MPMX20_03462 are separated by 129 nucleotidesMPMX20_03462 and MPMX20_03463 overlap by 4 nucleotidesMPMX20_03463 and MPMX20_03464 are separated by 131 nucleotides MPMX20_03460: MPMX20_03460 - 16S ribosomal RNA, at 3,649,422 to 3,650,957 _03460 MPMX20_03461: MPMX20_03461 - Chaperone protein ClpB, at 3,651,389 to 3,653,962 _03461 MPMX20_03462: MPMX20_03462 - Polyphenol oxidase, at 3,654,092 to 3,654,823 _03462 MPMX20_03463: MPMX20_03463 - Ribosomal large subunit pseudouridine synthase D, at 3,654,820 to 3,655,800 _03463 MPMX20_03464: MPMX20_03464 - Outer membrane protein assembly factor BamD, at 3,655,932 to 3,656,669 _03464
Group Condition MPMX20_03460 MPMX20_03461 MPMX20_03462 MPMX20_03463 MPMX20_03464
mixed community AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001 N.D. +0.2 +0.1 -3.8 N.D.
mixed community AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001 N.D. -0.1 -0.2 -2.9 N.D.
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 N.D. -0.2 -0.1 -2.6 N.D.
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 N.D. +0.2 -0.1 -2.7 N.D.
mixed community AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.001 N.D. +0.4 -0.2 -2.6 N.D.
nitrogen source D-Serine (N) N.D. +0.0 +0.0 -2.4 N.D.
mixed community AMD2036 coinoculated with AMD2587 on RCH2 to a starting OD of 0.0001 N.D. -0.0 -0.0 -2.2 N.D.
mixed community AMD2036 coinoculated with AMD2590 on TSA to a starting OD of 0.01 N.D. -0.0 +0.2 -2.4 N.D.
mixed community AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001 N.D. -0.2 -0.1 -2.0 N.D.
mixed community TSB plate, 1:1 coculture with Brevibacillus agri TBS_043 N.D. +0.0 -0.6 -1.6 N.D.
motility; outer cut Motility test in 1X LB; 1 day; outer cut; 0.3% agar N.D. -0.0 +0.0 -2.2 N.D.
mixed community AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.01 N.D. +0.0 +0.1 -2.0 N.D.
carbon source D-Xylose (C) N.D. +0.2 +0.1 -2.3 N.D.
nitrogen source Putrescine (N) N.D. +0.2 +0.1 -2.2 N.D.
mixed community 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. +0.4 -1.7 -0.5 N.D.
carbon source L-Valine (C) N.D. +0.0 +0.1 -1.9 N.D.
mixed community AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01 N.D. +0.1 +0.5 -2.2 N.D.
mixed community M9 plate, 1:1 coculture with Brevibacillus agri TBS_043 N.D. +0.5 -0.3 -1.7 N.D.
carbon source Glycerol (C) N.D. -0.0 +0.1 -1.6 N.D.
motility; outer cut Motility test in 1X LB; 1 day; outer cut; 0.3% agar N.D. +0.2 -0.1 -1.5 N.D.
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 N.D. +0.1 +0.2 -1.6 N.D.
carbon source L-Malic (C) N.D. +0.4 -0.1 -1.6 N.D.
carbon source D,L-Lactate (C) N.D. +0.2 +0.2 -1.5 N.D.
carbon source D-Sorbitol (C) N.D. +0.1 +0.2 -1.5 N.D.
carbon source D-Trehalose (C) N.D. +0.2 +0.2 -1.5 N.D.
carbon source D-Mannitol (C) N.D. +0.4 +0.1 -1.6 N.D.
mixed community TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 N.D. +0.4 -0.4 -1.0 N.D.
nitrogen source Parabanic Acid (N) N.D. +0.2 +0.3 -1.3 N.D.
mixed community 1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 N.D. +0.4 -0.3 -1.0 N.D.
mixed community M9 plate, 1:1 coculture with Promicromonospora sp. SAI_038 N.D. +0.4 +0.1 -1.3 N.D.
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