Fitness for 5 genes in Enterobacter sp. TBS_079

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500 ntMPMX20_03439 and MPMX20_03440 are separated by 15 nucleotidesMPMX20_03440 and MPMX20_03441 are separated by 185 nucleotidesMPMX20_03441 and MPMX20_03442 overlap by 4 nucleotidesMPMX20_03442 and MPMX20_03443 overlap by 1 nucleotides MPMX20_03439: MPMX20_03439 - Signal peptidase I, at 3,626,051 to 3,627,025 _03439 MPMX20_03440: MPMX20_03440 - Elongation factor 4, at 3,627,041 to 3,628,840 _03440 MPMX20_03441: MPMX20_03441 - Protein RseC, at 3,629,026 to 3,629,502 _03441 MPMX20_03442: MPMX20_03442 - Sigma-E factor regulatory protein RseB, at 3,629,499 to 3,630,452 _03442 MPMX20_03443: MPMX20_03443 - Anti-sigma-E factor RseA, at 3,630,452 to 3,631,102 _03443
Group Condition MPMX20_03439 MPMX20_03440 MPMX20_03441 MPMX20_03442 MPMX20_03443
mixed community TSB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -2.0 -0.7 -4.2 -4.6
mixed community TSB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -1.9 -1.1 -3.5 -2.9
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 N.D. -1.9 -0.1 +0.2 -6.4
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 N.D. -2.2 -0.3 +0.2 -5.5
mixed community TSB plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -1.7 -0.3 -1.7 -3.0
mixed community TSB plate, Mixed culture; Bacillus subtilis TBS_111 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -0.8 -0.5 -2.0 -3.3
mixed community AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001 N.D. -3.5 -0.8 -0.1 -2.2
mixed community 1X LB plate, Mixed culture; Bacillus subtilis TBS_111 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -1.4 -0.7 -1.3 -3.0
motility; outer cut Motility test in 1X LB; 1 day; outer cut; 0.3% agar N.D. -2.3 -0.3 -1.1 -2.1
mixed community 0.1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -2.5 -0.7 -0.7 -2.0
mixed community 1X LB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -1.9 -1.1 -1.0 -1.9
mixed community Outgrowth from agar plate co-culture with Achromobacter sp. TBS_048 N.D. -2.5 -1.0 -0.7 -1.7
mixed community 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -2.5 -0.8 -0.5 -1.9
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 N.D. -0.9 -2.1 +0.0 -2.7
mixed community 1X LB plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -1.5 -0.3 -1.3 -2.6
mixed community 1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -1.5 -0.5 -1.1 -2.4
mixed community 1X LB plate, Mixed culture; Bacillus megaterium TBS_053 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -1.1 -0.7 -0.7 -2.9
mixed community 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -1.8 -0.1 -0.8 -2.8
mixed community 1X LB plate, Mixed culture; Streptomyces sp. SAI_041 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -0.2 -0.3 -1.8 -2.9
mixed community 0.1X LB plate, Mixed culture; Streptomyces collinus SAI_078 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -1.9 -0.5 -0.8 -2.0
mixed community 0.1X LB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -2.2 -0.2 -1.1 -1.7
mixed community AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001 N.D. -3.4 -1.1 +0.1 -0.5
motility; outer cut Motility test in 1X LB; 1 day; outer cut; 0.3% agar N.D. -2.4 +0.4 -0.8 -1.6
mixed community 0.1X LB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -1.9 -1.1 +0.5 -1.7
carbon source Ethanol (C) N.D. -1.2 -1.3 +1.0 -1.6
mixed community 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -0.8 -0.5 +1.7 -2.5
mixed community 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090 N.D. -1.1 +0.6 +1.5 -2.0
mixed community M9 plate, 1:1 coculture with Brevibacillus agri TBS_043 N.D. -2.0 -0.5 +2.7 -0.2
mixed community 1X LB plate, 1:1 coculture with Bacillus megaterium TBS_037 N.D. -1.5 -0.5 +2.0 +1.1
mixed community M9 plate, 1:1 coculture with Flavobacterium anhuiense SO6b N.D. -1.7 +0.2 +1.9 +2.1
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