Fitness for 5 genes in Enterobacter sp. TBS_079

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Top 30 experiments (either direction), sorted by average fitness

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500 ntMPMX20_01611 and MPMX20_01612 are separated by 123 nucleotidesMPMX20_01612 and MPMX20_01613 are separated by 59 nucleotidesMPMX20_01613 and MPMX20_01614 are separated by 80 nucleotidesMPMX20_01614 and MPMX20_01615 are separated by 25 nucleotides MPMX20_01611: MPMX20_01611 - Inner membrane protein YccF, at 1,704,228 to 1,704,674 _01611 MPMX20_01612: MPMX20_01612 - DNA helicase IV, at 1,704,798 to 1,706,852 _01612 MPMX20_01613: MPMX20_01613 - Methylglyoxal synthase, at 1,706,912 to 1,707,370 _01613 MPMX20_01614: MPMX20_01614 - hypothetical protein, at 1,707,451 to 1,708,260 _01614 MPMX20_01615: MPMX20_01615 - putative protein YccU, at 1,708,286 to 1,708,702 _01615
Group Condition MPMX20_01611 MPMX20_01612 MPMX20_01613 MPMX20_01614 MPMX20_01615
mixed community 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -1.3 -0.2 -0.1 -0.0 -1.1
mixed community 1X LB plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.1 -0.7 -0.4 -0.1 -0.7
mixed community 1X LB plate, Mixed culture; Bacillus subtilis TBS_111 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct +0.2 -0.5 -0.5 -0.5 -0.5
mixed community 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct -0.6 -0.1 +0.2 -0.4 -1.0
mixed community TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.7 +0.1 -0.1 -0.4 -0.8
mixed community 1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct -1.0 -0.4 +0.2 -0.1 -0.6
mixed community M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.1 +0.1 -0.3 +0.0 -1.6
nitrogen source Gelatin (N) -0.1 +0.1 -0.6 -0.5 -0.8
nitrogen source L-Histidine (N) -0.5 -0.2 -1.0 -0.5 +0.5
carbon source octanoate (C) +0.1 +0.0 +1.2 -1.1 -1.7
mixed community TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct +0.0 +0.4 -1.1 +0.9 -1.6
mixed community AMD2036 coinoculated with AMD2910 on LB to a starting OD of 0.001 +0.1 -0.3 -1.5 +0.3 +0.2
mixed community 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 -0.6 -0.0 -0.1 -1.1 +0.6
nitrogen source L-Lysine (N) +0.6 -0.0 -0.9 -0.7 +0.0
mixed community M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 -0.6 -0.4 +0.6 +0.2 -0.7
mixed community 1X LB plate, Mixed culture; Streptomyces sp. SAI_041 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.5 -0.1 +0.7 -0.5 -0.4
mixed community M9 plate, 1:1 coculture with Pseudomonas silesiensis TBS_010 -0.8 -0.2 +0.0 -0.4 +0.7
mixed community M9 plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct +0.5 -0.3 -0.7 +0.3 -0.3
carbon source Cytosine (C) -0.5 +0.3 +0.7 -0.3 -0.6
mixed community M9 plate, 1:1 coculture with Rhodococcus aetherivorans MH2 -1.4 -0.0 -0.8 +0.8 +1.0
mixed community 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090 +0.0 -0.7 +0.5 +0.7 -0.8
mixed community 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 -0.4 -0.7 +0.2 -0.1 +0.7
mixed community M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.4 -0.0 +0.9 +0.4 -1.2
mixed community M9 plate, 1:1 coculture with Amycolatopsis sp. SAI_101 -0.1 -0.5 +0.3 -0.3 +0.9
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 +0.1 +0.0 +0.8 +0.8 -1.2
mixed community 1X LB plate, 1:1 coculture with Sphingobium xenophagum Sin1 -0.4 -0.3 -0.1 +0.6 +1.0
mixed community 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031 +1.1 -0.1 -0.5 +0.1 +0.7
carbon source Parabanic Acid (C) +0.5 +0.2 -0.3 +0.1 +1.0
mixed community M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 +0.2 -0.3 +1.1 -0.4 +1.4
mixed community TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 +0.1 +0.1 +2.2 +0.5 +0.2
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