Fitness for 5 genes in Enterobacter sp. TBS_079

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500 ntMPMX20_01588 and MPMX20_01589 are separated by 169 nucleotidesMPMX20_01589 and MPMX20_01590 are separated by 255 nucleotidesMPMX20_01590 and MPMX20_01591 are separated by 43 nucleotidesMPMX20_01591 and MPMX20_01592 overlap by 4 nucleotides MPMX20_01588: MPMX20_01588 - Asparagine--tRNA ligase, at 1,675,172 to 1,676,572 _01588 MPMX20_01589: MPMX20_01589 - Nicotinate phosphoribosyltransferase, at 1,676,742 to 1,677,944 _01589 MPMX20_01590: MPMX20_01590 - Aminopeptidase N, at 1,678,200 to 1,680,812 _01590 MPMX20_01591: MPMX20_01591 - Aliphatic sulfonates import ATP-binding protein SsuB, at 1,680,856 to 1,681,626 _01591 MPMX20_01592: MPMX20_01592 - Putative aliphatic sulfonates transport permease protein SsuC, at 1,681,623 to 1,682,414 _01592
Group Condition MPMX20_01588 MPMX20_01589 MPMX20_01590 MPMX20_01591 MPMX20_01592
mixed community 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 N.D. +0.0 -0.3 -1.6 +0.3
carbon source Ethanol (C) N.D. +0.0 -0.1 -1.5 +0.2
mixed community AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001 N.D. -0.4 +0.1 -0.8 -0.2
nitrogen source D-Salicin (N) N.D. -0.1 -0.1 -0.6 -0.4
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 N.D. -0.6 -0.3 +0.4 -0.6
mixed community AMD2036 coinoculated with AMD2590 on LB to a starting OD of 0.01 N.D. -0.2 +0.2 -0.7 -0.2
mixed community AMD2036 coinoculated with AMD2910 on RCH2 to a starting OD of 0.001 N.D. -0.2 -0.0 -1.0 +0.4
mixed community 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090 N.D. -0.0 -0.3 -0.8 +0.4
mixed community TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. +0.3 +0.2 -0.2 -1.0
mixed community M9 plate, 1:1 coculture with Agromyces sp. SAI_196 N.D. +0.4 +0.1 -0.9 -0.0
nitrogen source butyrate (N) N.D. +0.2 -0.4 -0.4 +0.3
nitrogen source Glycine (N) N.D. +0.6 -0.7 -0.2 +0.1
mixed community 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -0.1 -0.5 +0.6 -0.2
mixed community 1X LB plate, Mixed culture; Streptomyces sp. SAI_041 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. +0.4 +0.4 -0.2 -0.7
mixed community 1X LB plate, Mixed culture; Streptomyces sp. SAI_117 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -0.2 -0.4 +0.5 -0.1
mixed community 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -0.2 -0.5 +1.0 -0.4
mixed community TSB plate, 1:1 coculture with Rhizobium pusense TBS_045 N.D. -0.2 +0.5 -0.7 +0.4
mixed community AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001 N.D. -0.5 -0.2 +0.5 +0.3
mixed community 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. +0.5 -0.1 +0.3 -0.4
mixed community M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. +0.7 +0.4 -0.2 -0.5
mixed community 1X LB plate, Mixed culture; Streptomyces albogriseolus SAI_072 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. -0.1 +0.1 +1.0 -0.4
mixed community TSB plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. +0.5 -0.0 -0.3 +0.7
mixed community M9 plate, 1:1 coculture with Paenibacillus favisporus 004-C2 N.D. +0.2 -0.1 +1.1 -0.1
mixed community M9 plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272 N.D. +0.7 +0.3 -0.4 +0.5
mixed community 0.1X LB plate, Mixed culture; Bacillus megaterium TBS_053 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. +0.5 +0.1 +0.7 -0.1
mixed community M9 plate, 1:1 coculture with Amycolatopsis sp. SAI_101 N.D. +0.3 -0.1 +0.7 +0.3
mixed community 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4 N.D. +0.4 +0.1 +0.6 +0.2
mixed community M9 plate, 1:1 coculture with Brevibacillus agri TBS_043 N.D. +0.4 +0.3 +1.0 +0.0
mixed community TSB plate, Mixed culture; Bacillus subtilis TBS_111 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. +0.9 +0.3 +0.8 -0.2
mixed community M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 N.D. +0.3 +0.7 +1.0 -0.0
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