Fitness for 5 genes in Enterobacter sp. TBS_079

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 337 experiments or choose conditions or try the comparative fitness browser

500 ntMPMX20_01561 and MPMX20_01562 are separated by 204 nucleotidesMPMX20_01562 and MPMX20_01563 are separated by 51 nucleotidesMPMX20_01563 and MPMX20_01564 are separated by 448 nucleotidesMPMX20_01564 and MPMX20_01565 are separated by 127 nucleotides MPMX20_01561: MPMX20_01561 - Pyruvate formate-lyase 1-activating enzyme, at 1,639,107 to 1,639,847 _01561 MPMX20_01562: MPMX20_01562 - Formate acetyltransferase 1, at 1,640,052 to 1,642,334 _01562 MPMX20_01563: MPMX20_01563 - putative formate transporter 1, at 1,642,386 to 1,643,201 _01563 MPMX20_01564: MPMX20_01564 - Ribosomal protein S12 methylthiotransferase accessory factor YcaO, at 1,643,650 to 1,645,410 _01564 MPMX20_01565: MPMX20_01565 - hypothetical protein, at 1,645,538 to 1,646,230 _01565
Group Condition MPMX20_01561 MPMX20_01562 MPMX20_01563 MPMX20_01564 MPMX20_01565
carbon source D-Trehalose (C) -1.4 -1.1 -0.7 +0.1 -0.1
carbon source D-Cellobiose (C) -1.2 -1.1 -0.7 +0.1 -0.1
carbon source D-Raffinose (C) -1.2 -1.3 -0.6 +0.1 +0.1
carbon source Sucrose (C) -1.2 -1.3 -0.5 -0.0 +0.1
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 -1.0 -1.2 -0.2 -0.3 +0.1
carbon source D-Salicin (C) -1.1 -0.9 -0.6 +0.2 -0.1
carbon source D-Gluconic Acid (C) -0.9 -1.0 -0.7 +0.1 -0.0
carbon source D-Mannitol (C) -1.2 -0.7 -0.6 +0.1 -0.1
mixed community 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.5 -0.7 -0.6 +0.2 -0.6
mixed community TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.4 -0.7 -0.4 -0.3 -0.3
carbon source Cytidine (C) -1.1 -0.9 -0.5 +0.2 +0.2
carbon source D-Glucose (C) -0.7 -0.9 -0.6 +0.0 +0.0
mixed community TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 -0.8 -0.7 -0.6 +0.1 +0.0
nitrogen source D-Serine (N) -0.9 -0.7 -0.7 +0.2 +0.1
mixed community 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010 -1.3 -1.0 -0.4 +0.1 +0.6
mixed community 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 -0.6 -0.5 -0.6 -0.1 -0.1
carbon source D-Maltose (C) -1.0 -0.7 -0.4 -0.0 +0.2
carbon source D-Mannose (C) -0.7 -0.7 -0.5 +0.1 +0.0
carbon source D-Glucose-6-Phosphate (C) -0.8 -0.8 -0.5 +0.1 +0.2
nitrogen source D-Glucosamine Hydrochloride (N) -0.6 -0.5 -0.5 +0.0 -0.2
mixed community M9 plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.8 -0.2 -0.1 -0.1 -0.6
carbon source D-Fructose (C) -0.8 -0.8 -0.5 +0.2 +0.2
carbon source D-Glucosamine Hydrochloride (C) -0.9 -0.7 -0.4 +0.2 +0.2
carbon source D-Sorbitol (C) -0.9 -0.9 -0.3 +0.2 +0.2
nitrogen source Cytidine (N) -0.7 -0.7 -0.2 +0.0 +0.1
mixed community 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 -0.7 -0.6 -0.3 +0.1 +0.2
carbon source L-Arabinose (C) -0.7 -0.4 -0.3 +0.2 +0.1
carbon source D-Glucuronic Acid (C) -0.6 -0.6 -0.4 +0.2 +0.2
carbon source D-Galacturonic Acid (C) -0.6 -0.6 -0.3 +0.1 +0.3
carbon source D-Lactate (C) +0.7 +0.8 +0.3 +0.0 +0.0
remove
MPMX20_01561
plot		 remove
MPMX20_01562
plot		 remove
MPMX20_01563		 remove
MPMX20_01564
plot		 remove
MPMX20_01565
plot