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Fitness for 5 genes in
Enterobacter sp. TBS_079
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500 nt
MPMX20_00449 and MPMX20_00450 overlap by 50 nucleotides
MPMX20_00450 and MPMX20_00451 are separated by 9 nucleotides
MPMX20_00451 and MPMX20_00452 overlap by 8 nucleotides
MPMX20_00452 and MPMX20_00453 are separated by 85 nucleotides
MPMX20_00449: MPMX20_00449 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaE, at 463,423 to 463,884
_00449
MPMX20_00450: MPMX20_00450 - N-acetylmuramoyl-L-alanine amidase AmiB, at 463,835 to 465,247
_00450
MPMX20_00451: MPMX20_00451 - DNA mismatch repair protein MutL, at 465,257 to 467,101
_00451
MPMX20_00452: MPMX20_00452 - tRNA dimethylallyltransferase, at 467,094 to 468,044
_00452
MPMX20_00453: MPMX20_00453 - RNA-binding protein Hfq, at 468,130 to 468,441
_00453
Group
Condition
MPMX20
_00449
MPMX20
_00450
MPMX20
_00451
MPMX20
_00452
MPMX20
_00453
carbon source
L-Histidine (C)
N.D.
-0.1
+0.0
-3.1
-4.6
nitrogen source
Gly-Glu (N)
N.D.
-0.1
-0.0
-3.4
-3.8
mixed community
Outgrowth from agar plate co-culture with Achromobacter sp. TBS_048
N.D.
-0.3
-0.2
-1.7
-4.7
carbon source
D-Xyl (C)
N.D.
-0.2
-0.0
-1.7
-4.8
carbon source
D-Xyl (C)
N.D.
+0.1
-0.1
-1.8
-4.7
mixed community
TSB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
N.D.
+0.2
-0.3
-1.7
-4.1
mixed community
0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
N.D.
+0.0
-0.4
-1.9
-3.5
mixed community
TSB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
N.D.
+0.5
-0.2
-2.1
-3.8
carbon source
D-Fructose (C)
N.D.
+0.1
-0.1
-1.1
-4.5
mixed community
0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
N.D.
+0.2
-0.1
-1.6
-4.0
mixed community
LB agar plate coculture with Mixed culture; Kribbella shirazensis SAI_226 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
N.D.
+0.2
-0.1
-0.5
-5.1
mixed community
AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.01
N.D.
+0.1
-0.2
-1.4
-4.0
mixed community
Outgrowth from agar plate co-culture with Enterobacter sp. TBS_079
N.D.
-0.1
-0.2
-0.9
-4.3
carbon source
m-Inositol (C)
N.D.
+0.2
-0.1
-1.1
-4.4
mixed community
Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
N.D.
+0.3
-0.2
-0.8
-4.6
carbon source
L-Fucose (C)
N.D.
+0.1
-0.1
-1.0
-4.2
motility; outer cut
Motility test in 1X LB; 1 day; outer cut; 0.3% agar
N.D.
+0.1
+0.1
-1.3
-4.1
supernatant
mutant library grown in Supernatant; Enterobacter sp. TBS_079 grown in LB
N.D.
-0.0
+0.1
-0.6
-4.6
carbon source
NAG (C)
N.D.
+0.1
-0.3
-0.6
-4.4
mixed community
LB agar plate coculture with Mixed culture; Chryseobacterium proteolyticum TBS_027 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=direct
N.D.
+0.2
-0.1
-1.0
-4.2
carbon source
Tween 20 (C)
N.D.
+0.1
-0.0
-0.8
-4.5
carbon source
L-tyrosine (C)
N.D.
+0.1
+0.1
-1.0
-4.3
carbon source
L-Cysteine (C)
N.D.
+0.0
+0.1
-0.9
-4.3
mixed community
TSB plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
N.D.
+0.5
-0.3
-1.3
-3.8
mixed community
AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001
N.D.
-0.2
+0.4
-1.0
-4.2
mixed community
TSB plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
N.D.
+0.3
-0.0
-1.9
-3.1
carbon source
Thymine (C)
N.D.
+0.3
+0.1
-0.8
-4.1
mixed community
TSB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
N.D.
+0.6
-0.3
-1.0
-3.8
mixed community
1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
N.D.
+0.4
-0.6
-0.8
+4.6
mixed community
M9 plate, Mixed culture; Bacillus haynesii TBS_113 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
N.D.
-0.0
-0.6
-1.8
+6.6
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