Fitness for 5 genes in Methanococcus maripaludis S2

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500 ntMMP_RS08770 and MMP_RS08775 overlap by 4 nucleotidesMMP_RS08775 and MMP_RS08780 are separated by 9 nucleotidesMMP_RS08780 and MMP_RS08785 are separated by 5 nucleotidesMMP_RS08785 and MMP_RS08790 are separated by 8 nucleotides MMP_RS08770: MMP_RS08770 - hypothetical protein, at 1,644,208 to 1,645,104 _RS08770 MMP_RS08775: MMP_RS08775 - methanogenesis marker 9 domain-containing protein, at 1,645,101 to 1,645,556 _RS08775 MMP_RS08780: MMP_RS08780 - 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, at 1,645,566 to 1,646,231 _RS08780 MMP_RS08785: MMP_RS08785 - RNA-protein complex protein Nop10, at 1,646,237 to 1,646,392 _RS08785 MMP_RS08790: MMP_RS08790 - translation initiation factor IF-2 subunit alpha, at 1,646,401 to 1,647,198 _RS08790
Group Condition MMP_RS08770 MMP_RS08775 MMP_RS08780 MMP_RS08785 MMP_RS08790
rich t2 H2 McCas deepwell complete +0.1 +0.2 N.D. -4.6 -5.9
mixed community Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 20 generations +0.4 +0.9 N.D. -3.7 -7.2
mixed community Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations +0.3 +0.7 N.D. -2.8 -7.2
mixed community Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations +0.5 +0.6 N.D. -2.9 -7.1
mixed community Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations +0.6 +0.7 N.D. -2.7 -7.4
stress McCas_H2_complete Novobiocin 0.05 mM -0.1 -0.6 N.D. -6.6 -1.3
mixed community Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations +0.2 -0.6 N.D. -1.0 -6.7
nutrient t2 Formate deepwell acetate FREE +0.2 +0.5 N.D. -1.8 -6.9
stress McCas_H2_complete Chloride 250 mM +0.3 +0.3 N.D. -5.8 -2.7
mixed community Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations +0.4 +0.8 N.D. -1.9 -7.1
nitrogen source H2 N-free with 10mM L-Alanine +0.3 +0.3 N.D. -4.0 -4.1
mixed community Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations +0.5 +0.8 N.D. -1.7 -7.2
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE +0.2 +0.4 N.D. -1.1 -7.0
nutrient t2 H2 deepwell autotrophic conditions +0.2 +0.8 N.D. -2.7 -5.5
stress McCas_formate_complete Rifampicin 0.5 mM +0.0 +0.4 N.D. -2.4 -5.2
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE +0.7 +0.5 N.D. -2.0 -6.2
mixed community Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 10 generations +0.2 +0.5 N.D. -0.5 -7.2
mixed community Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 10 generations +0.2 +0.4 N.D. -1.3 -6.3
nutrient t1 Formate deepwell vitamin FREE +0.1 +0.6 N.D. -0.7 -6.9
nutrient t2 H2 deepwell acetate FREE -0.3 +1.1 N.D. -1.1 -6.1
nutrient t2 H2 deepwell casamino FREE +0.7 +0.6 N.D. -1.2 -6.3
nutrient t2 H2 deepwell acetate and casamino FREE +0.2 +1.0 N.D. -2.1 -5.3
stress McCas_formate_complete NO 0.025 mM +0.1 +0.9 N.D. -1.0 -6.0
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE +0.5 +0.8 N.D. -0.9 -6.3
nutrient t2 H2 deepwell autotrophic conditions +0.1 +1.1 N.D. -1.3 -5.5
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE +0.7 +0.6 N.D. -2.1 -4.7
nutrient t2 H2 deepwell acetate and vitamin FREE -0.2 +1.3 N.D. -1.4 -5.2
nutrient t2 H2 deepwell acetate and vitamin FREE +0.2 +1.1 N.D. -0.4 -6.3
stress H2 McCas with 40 minute oxygen exposure +0.6 +0.9 N.D. -2.4 -4.1
mixed community Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations +0.6 -0.7 N.D. +1.6 -6.2
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