Fitness for 5 genes in Methanococcus maripaludis S2

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500 ntMMP_RS07845 and MMP_RS07850 are separated by 110 nucleotidesMMP_RS07850 and MMP_RS07855 overlap by 4 nucleotidesMMP_RS07855 and MMP_RS07860 overlap by 4 nucleotidesMMP_RS07860 and MMP_RS07865 are separated by 9 nucleotides MMP_RS07845: MMP_RS07845 - LL-diaminopimelate aminotransferase, at 1,486,064 to 1,487,314 _RS07845 MMP_RS07850: MMP_RS07850 - prephenate dehydratase, at 1,487,425 to 1,488,231 _RS07850 MMP_RS07855: MMP_RS07855 - class I SAM-dependent methyltransferase, at 1,488,228 to 1,488,938 _RS07855 MMP_RS07860: MMP_RS07860 - hypothetical protein, at 1,488,935 to 1,489,225 _RS07860 MMP_RS07865: MMP_RS07865 - methanogenesis marker 2 protein, at 1,489,235 to 1,490,206 _RS07865
Group Condition MMP_RS07845 MMP_RS07850 MMP_RS07855 MMP_RS07860 MMP_RS07865
nutrient t2 H2 deepwell autotrophic conditions -8.9 +0.2 +0.2 -2.9 N.D.
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE -9.6 -0.4 +0.3 -0.7 N.D.
rich t2 H2 McCas, 5g/L bicarb, 40 psi H2CO2 -9.8 -0.1 +0.3 -0.8 N.D.
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE -10.0 -0.2 +0.1 -0.3 N.D.
mixed community Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations -8.5 -0.6 +0.5 -1.5 N.D.
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE -9.2 -0.4 +0.4 -0.5 N.D.
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE -9.8 -0.2 +0.5 -0.1 N.D.
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2 -9.7 -0.2 +0.3 +0.1 N.D.
nutrient t2 H2 deepwell vitamin and casamino FREE -8.5 +0.1 +0.4 -1.4 N.D.
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE -9.9 +0.1 +0.3 +0.2 N.D.
rich t2 H2 McCas deepwell complete -8.6 +1.0 +0.7 -2.0 N.D.
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE -10.0 +0.3 +0.2 +0.7 N.D.
nutrient t2 Formate deepwell acetate and casamino FREE -9.4 +0.1 +0.1 +0.8 N.D.
nutrient t2 Formate deepwell acetate and casamino FREE -9.7 +0.2 +0.4 +0.8 N.D.
mixed community Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations -8.9 +0.4 +0.5 -0.4 N.D.
mixed community Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations -8.8 +0.4 +0.5 -0.5 N.D.
nutrient t1 Formate deepwell casamino FREE -9.7 +0.2 +0.1 +1.0 N.D.
nutrient t2 H2 deepwell vitamin and casamino FREE -9.1 -0.8 +0.4 +1.3 N.D.
mixed community Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations -9.0 +0.2 +0.5 +0.4 N.D.
nutrient t2 Formate deepwell vitamin and casamino FREE -9.2 +0.2 +0.3 +0.9 N.D.
nutrient t2 H2 deepwell acetate and casamino FREE -9.1 -0.1 +0.3 +1.1 N.D.
nutrient t2 H2 deepwell acetate and casamino FREE -8.9 -0.2 +0.3 +1.1 N.D.
nutrient t2 H2 deepwell autotrophic conditions -8.9 -0.3 +0.1 +1.5 N.D.
nutrient t2 H2 deepwell casamino FREE -9.0 +0.3 +0.1 +1.4 N.D.
nutrient t2 H2 deepwell acetate and casamino FREE -8.9 +0.4 +0.0 +1.3 N.D.
nutrient t2 H2 deepwell vitamin FREE -8.6 +1.5 +0.0 +0.2 N.D.
nutrient t2 H2 deepwell acetate FREE -9.0 +0.3 +0.5 +2.3 N.D.
stress Formate 100 mM hypophosphite -1.3 +10.8 +0.6 +0.4 N.D.
stress Formate 100 mM hypophosphite -2.0 +12.2 +1.4 -0.2 N.D.
stress Formate 100 mM hypophosphite -0.8 +11.6 +1.3 -0.5 N.D.
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