Fitness for 5 genes in Methanococcus maripaludis S2

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	MMP_RS07605	MMP_RS07610	MMP_RS07615	MMP_RS07620	MMP_RS07625
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations	-8.6	N.D.	-7.1	-2.7	-6.8
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations	-4.8	N.D.	-5.8	-9.0	-3.5
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations	-4.4	N.D.	-4.1	-2.0	-6.9
nutrient t2	H2 deepwell acetate FREE	-3.3	N.D.	-4.7	-4.3	-4.7
nutrient t2	H2 deepwell acetate and vitamin FREE	-2.5	N.D.	-3.9	-4.4	-5.9
nutrient t2	H2 deepwell acetate and vitamin FREE	-2.7	N.D.	-5.5	-4.6	-3.9
nutrient t2	H2 deepwell acetate FREE	-2.4	N.D.	-4.9	-4.8	-4.4
nutrient t2	H2 deepwell acetate and vitamin FREE	-3.5	N.D.	-4.9	-3.9	-3.9
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations	-8.2	N.D.	-2.7	-1.9	-3.2
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations	-5.7	N.D.	-3.3	-2.2	-4.4
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations	-4.1	N.D.	-3.5	-2.9	-5.0
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 20 generations	-7.1	N.D.	-3.1	-1.5	-3.3
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations	-8.1	N.D.	-2.6	-1.6	-2.6
nutrient t2	H2 deepwell acetate FREE	-2.5	N.D.	-3.7	-3.9	-4.7
stress	McCas_formate_complete Rifampicin 0.5 mM	-5.9	N.D.	-3.5	-2.6	-2.7
rich t2	H2 McCas deepwell complete	-3.5	N.D.	-3.5	-3.6	-3.0
nutrient t2	H2 deepwell vitamin FREE	-3.3	N.D.	-3.1	-3.4	-3.5
stress	McCas_formate_complete sodium nitrite 0.25 mM	-1.5	N.D.	-4.6	-4.1	-3.0
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 10 generations	-4.2	N.D.	-3.6	-1.5	-3.6
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations	-4.5	N.D.	-2.5	-2.8	-3.1
stress	McCas_formate_complete NO 0.025 mM	-2.5	N.D.	-3.2	-2.5	-4.4
stress	McCas_formate_complete sulfate 125 mM	-6.0	N.D.	-2.2	-2.2	-1.9
stress	McCas_formate_complete NO 0.025 mM	-1.5	N.D.	-4.6	-2.9	-3.1
stress	McCas_formate_complete Rifampicin 0.5 mM	-2.8	N.D.	-3.0	-2.7	-3.3
stress	H2 McCas with 10 mM thiosulfate	-2.1	N.D.	+3.9	+3.4	+4.0
stress	H2 McCas with 10 mM thiosulfate	-2.1	N.D.	+4.4	+3.8	+3.4
natural competence	H2 McCas- cells grown in liquid medium with neomycin	-2.3	N.D.	+7.8	+9.5	-0.2
natural competence	H2 McCas- cells grown in liquid medium with neomycin	-0.2	N.D.	+7.1	+8.2	+0.2
natural competence	H2 McCas- cells grown in liquid medium with neomycin	-0.6	N.D.	+7.5	+8.8	-0.2
natural competence	H2 McCas- cells incubated with 5000 ng DNA (pDNA pLW40neo) then transferred and grown in liquid medium with neomycin	-0.6	N.D.	+8.6	+9.3	+0.1