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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS07510 and MMP_RS07515 are separated by 22 nucleotides
MMP_RS07515 and MMP_RS07520 are separated by 14 nucleotides
MMP_RS07520 and MMP_RS07525 are separated by 28 nucleotides
MMP_RS07525 and MMP_RS07530 overlap by 8 nucleotides
MMP_RS07510: MMP_RS07510 - DUF1959 domain-containing protein, at 1,423,152 to 1,423,562
_RS07510
MMP_RS07515: MMP_RS07515 - NADH-quinone oxidoreductase subunit B family protein, at 1,423,585 to 1,424,055
_RS07515
MMP_RS07520: MMP_RS07520 - nickel-dependent hydrogenase large subunit, at 1,424,070 to 1,425,197
_RS07520
MMP_RS07525: MMP_RS07525 - 4Fe-4S binding protein, at 1,425,226 to 1,426,407
_RS07525
MMP_RS07530: MMP_RS07530 - 4Fe-4S binding protein, at 1,426,400 to 1,426,885
_RS07530
Group
Condition
MMP
_RS07510
MMP
_RS07515
MMP
_RS07520
MMP
_RS07525
MMP
_RS07530
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
N.D.
N.D.
N.D.
-7.0
-0.3
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations
N.D.
N.D.
N.D.
-6.6
-0.4
nitrogen source
H2 N-free with 10mM L-Lysine
N.D.
N.D.
N.D.
-5.0
-1.7
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations
N.D.
N.D.
N.D.
-6.2
-0.5
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
N.D.
N.D.
N.D.
-6.1
-0.5
nitrogen source
H2 N-free with 10mM L-Glutamic
N.D.
N.D.
N.D.
-4.2
-2.3
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations
N.D.
N.D.
N.D.
-6.2
-0.3
nutrient t2
Formate deepwell autotrophic conditions
N.D.
N.D.
N.D.
-5.3
-0.8
nitrogen source
H2 N-free with 10mM L-Methionine
N.D.
N.D.
N.D.
-4.2
-1.8
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations
N.D.
N.D.
N.D.
-6.1
+0.3
nitrogen source
N2 fixation, H2 media
N.D.
N.D.
N.D.
-4.1
-1.6
nutrient t2
Formate deepwell autotrophic conditions
N.D.
N.D.
N.D.
-5.0
-0.8
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
N.D.
N.D.
N.D.
-5.0
-0.8
nitrogen source
H2 N-free with 10mM L-Valine
N.D.
N.D.
N.D.
-4.2
-1.5
nitrogen source
H2 N-free with 10mM L-Methionine
N.D.
N.D.
N.D.
-4.3
-1.4
nitrogen source
H2 N-free with 10mM L-Ornithine
N.D.
N.D.
N.D.
-4.0
-1.6
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
N.D.
N.D.
N.D.
-5.9
+0.3
nitrogen source
H2 N-free with 10mM L-Arginine
N.D.
N.D.
N.D.
-3.9
-1.7
nitrogen source
H2 N-free with 10mM L-Citrulline
N.D.
N.D.
N.D.
-4.3
-1.3
nutrient t2
Formate deepwell acetate and casamino FREE
N.D.
N.D.
N.D.
-5.0
-0.6
nitrogen source
H2 N-free with 10mM L-Ornithine
N.D.
N.D.
N.D.
-4.0
-1.6
nitrogen source
H2 N-free with 10mM L-Valine
N.D.
N.D.
N.D.
-4.1
-1.5
nitrogen source
H2 N-free with 2mM Adenine
N.D.
N.D.
N.D.
-4.2
-1.3
nitrogen source
H2 N-free with 10mM L-Arginine
N.D.
N.D.
N.D.
-4.1
-1.4
nitrogen source
H2 N-free with 10mM L-Citrulline
N.D.
N.D.
N.D.
-4.2
-1.3
nitrogen source
N2 fixation, H2 media
N.D.
N.D.
N.D.
-3.8
-1.6
nitrogen source
H2 N-free with 10mM Gly-Glu
N.D.
N.D.
N.D.
-3.6
-1.7
nutrient t2
Formate deepwell acetate and casamino FREE
N.D.
N.D.
N.D.
-4.6
-0.7
nitrogen source
H2 N-free with 10mM Gly-Glu
N.D.
N.D.
N.D.
-3.4
-1.8
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 20 generations
N.D.
N.D.
N.D.
-5.5
+0.5
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