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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS07135 and MMP_RS07140 are separated by 108 nucleotides
MMP_RS07140 and MMP_RS07145 are separated by 46 nucleotides
MMP_RS07145 and MMP_RS07150 are separated by 45 nucleotides
MMP_RS07150 and MMP_RS07155 are separated by 55 nucleotides
MMP_RS07135: MMP_RS07135 - coenzyme F420 hydrogenase subunit beta, at 1,365,076 to 1,365,924
_RS07135
MMP_RS07140: MMP_RS07140 - TIGR00341 family protein, at 1,366,033 to 1,367,040
_RS07140
MMP_RS07145: MMP_RS07145 - AmmeMemoRadiSam system protein B, at 1,367,087 to 1,367,941
_RS07145
MMP_RS07150: MMP_RS07150 - MTH895/ArsE family thioredoxin-like protein, at 1,367,987 to 1,368,232
_RS07150
MMP_RS07155: MMP_RS07155 - MFS transporter, at 1,368,288 to 1,369,436
_RS07155
Group
Condition
MMP
_RS07135
MMP
_RS07140
MMP
_RS07145
MMP
_RS07150
MMP
_RS07155
stress
McCas_H2_complete Sulfaquinoxaline 0.1 mM
-2.3
-0.3
+0.1
-0.3
+0.8
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
-2.5
+0.3
+0.2
+0.2
+0.3
stress
H2 McCas with 1 hour oxygen exposure
-2.2
+0.2
+0.3
+0.1
+0.5
stress
H2 McCas with 1 hour oxygen exposure
-2.5
+0.2
+0.3
+0.3
+0.5
stress
H2 McCas with 20 minute oxygen exposure
-2.2
+0.2
+0.3
+0.2
+0.5
stress
H2 McCas with 40 minute oxygen exposure
-2.7
+0.3
+0.5
+0.3
+0.6
stress
H2 McCas with 1 mM polysulfide
-2.0
+0.1
+0.3
+0.4
+0.4
stress
H2 McCas with 40 minute oxygen exposure
-2.6
+0.3
+0.4
+0.6
+0.6
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations
-2.2
+0.4
+0.4
+0.3
+0.5
stress
H2 McCas with 20 minute oxygen exposure
-2.3
+0.3
+0.5
+0.6
+0.6
stress
H2 McCas with 1 hour oxygen exposure
-2.1
+0.2
+0.4
+0.7
+0.5
stress
H2 McCas with 5 minute oxygen exposure
-1.8
+0.2
+0.4
+0.4
+0.5
stress
H2 McCas with 20 minute oxygen exposure
-1.8
+0.2
+0.4
+0.4
+0.5
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations
-1.6
+0.4
+0.4
+0.2
+0.4
stress
H2 McCas with 5 minute oxygen exposure
-1.7
+0.3
+0.5
+0.3
+0.4
stress
H2 McCas with 5 minute oxygen exposure
-1.5
+0.4
+0.4
+0.2
+0.4
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations
-1.8
+0.2
+0.4
+0.6
+0.5
stress
H2 McCas with 40 minute oxygen exposure
-2.2
+0.4
+0.5
+0.7
+0.6
stress
H2 McCas with 1 mM polysulfide
-1.4
+0.3
+0.2
+0.3
+0.6
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
-1.4
+0.6
+0.4
+0.3
+0.2
stress
H2 McCas with 1 mM Na2S
-1.6
+0.2
+0.3
+0.6
+0.6
nitrogen source
H2 N-free with 10mM L-Threonine
-0.9
+0.1
-0.4
+0.9
+0.5
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
-1.4
+0.3
+0.6
+0.3
+0.6
stress
H2 McCas with 1 mM Na2S
-1.1
+0.3
+0.3
+0.6
+0.6
stress
H2 McCas with 1 mM Na2S
-1.3
+0.3
+0.4
+0.9
+0.6
nitrogen source
H2 N-free with 5mM Inosine
-0.5
+0.4
-0.4
+0.6
+0.9
nutrient t2
H2 deepwell acetate FREE
-0.5
+0.6
+0.5
+0.6
+0.6
rich t2
H2 McCas deepwell complete
-0.2
+0.5
+0.3
+1.6
+0.5
stress
Formate 100 mM hypophosphite
+3.3
-0.3
+0.1
-0.3
+0.1
stress
Formate 100 mM hypophosphite
+3.7
-0.3
+0.2
-0.1
+0.4
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