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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS07120 and MMP_RS07125 are separated by 102 nucleotides
MMP_RS07125 and MMP_RS07130 are separated by 14 nucleotides
MMP_RS07130 and MMP_RS07135 are separated by 33 nucleotides
MMP_RS07135 and MMP_RS07140 are separated by 108 nucleotides
MMP_RS07120: MMP_RS07120 - coenzyme F420 hydrogenase subunit alpha, at 1,362,470 to 1,363,714
_RS07120
MMP_RS07125: MMP_RS07125 - coenzyme F420-reducing hydrogenase FrhD protein, at 1,363,817 to 1,364,341
_RS07125
MMP_RS07130: MMP_RS07130 - coenzyme F420 hydrogenase subunit gamma, at 1,364,356 to 1,365,042
_RS07130
MMP_RS07135: MMP_RS07135 - coenzyme F420 hydrogenase subunit beta, at 1,365,076 to 1,365,924
_RS07135
MMP_RS07140: MMP_RS07140 - TIGR00341 family protein, at 1,366,033 to 1,367,040
_RS07140
Group
Condition
MMP
_RS07120
MMP
_RS07125
MMP
_RS07130
MMP
_RS07135
MMP
_RS07140
stress
H2 McCas with 40 minute oxygen exposure
-2.3
-2.9
-2.1
-2.6
+0.3
stress
H2 McCas with 40 minute oxygen exposure
-2.1
-1.9
-2.0
-2.7
+0.3
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
-1.6
-1.6
-1.8
-2.5
+0.3
stress
McCas_H2_complete Sulfaquinoxaline 0.1 mM
-1.3
-1.9
-1.4
-2.3
-0.3
stress
H2 McCas with 1 hour oxygen exposure
-1.7
-1.5
-1.6
-2.5
+0.2
stress
H2 McCas with 1 hour oxygen exposure
-1.8
-1.5
-1.6
-2.2
+0.2
stress
H2 McCas with 20 minute oxygen exposure
-1.7
-1.4
-1.7
-2.3
+0.3
stress
H2 McCas with 40 minute oxygen exposure
-1.7
-1.4
-1.8
-2.2
+0.4
stress
H2 McCas with 20 minute oxygen exposure
-1.7
-1.4
-1.6
-2.2
+0.2
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations
-1.3
-1.7
-1.8
-2.2
+0.4
stress
H2 McCas with 1 hour oxygen exposure
-1.8
-1.3
-1.6
-2.1
+0.2
stress
H2 McCas with 20 minute oxygen exposure
-1.6
-1.7
-1.7
-1.8
+0.2
stress
H2 McCas with 1 mM polysulfide
-1.6
-1.3
-1.5
-2.0
+0.1
rich t2
H2 McCas, 5g/L bicarb, 40 psi H2CO2
-1.5
-1.9
-1.8
-0.8
+0.1
stress
H2 McCas with 1 mM polysulfide
-1.6
-1.1
-1.5
-1.6
+0.0
stress
H2 McCas with 5 minute oxygen exposure
-1.5
-1.1
-1.4
-1.8
+0.2
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations
-1.6
-1.1
-1.2
-1.8
+0.2
stress
H2 McCas with 1 mM Na2S
-1.2
-1.5
-1.2
-1.6
+0.2
stress
McCas_H2_complete Sulfaquinoxaline 0.1 mM
-1.2
-1.2
-1.1
-1.3
-0.4
stress
H2 McCas with 5 minute oxygen exposure
-1.3
-1.3
-1.4
-1.5
+0.4
stress
H2 McCas with 1 mM polysulfide
-1.3
-1.2
-1.3
-1.4
+0.3
stress
H2 McCas with 5 minute oxygen exposure
-1.1
-1.0
-1.2
-1.7
+0.3
stress
H2 50 mM hypophosphite
-1.8
-1.0
-1.0
-1.4
+0.5
nutrient t2
H2 deepwell autotrophic conditions
+1.1
+1.7
+1.3
+1.2
+0.2
stress
McCas_H2_complete Nitrofurantoin 0.1 mM
+1.3
+1.9
+2.1
+1.0
+0.1
stress
McCas_H2_complete Calcium Chloride Dihydrate 83.3333333333333 mM
+1.9
+2.0
+1.8
+1.0
+0.2
stress
Formate 100 mM hypophosphite
+1.7
+2.1
+1.4
+1.9
-0.2
stress
Formate 100 mM hypophosphite
+3.3
+3.7
+3.1
+3.3
-0.3
stress
McCas_H2_complete Thioridazine 0.1 mM
+4.5
+2.0
+5.1
+1.6
-0.1
stress
Formate 100 mM hypophosphite
+3.8
+3.5
+3.4
+3.7
-0.3
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