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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS06540 and MMP_RS06545 are separated by 10 nucleotides
MMP_RS06545 and MMP_RS06550 are separated by 83 nucleotides
MMP_RS06550 and MMP_RS06555 are separated by 51 nucleotides
MMP_RS06555 and MMP_RS06560 are separated by 262 nucleotides
MMP_RS06540: MMP_RS06540 - 3-methyl-2-oxobutanoate dehydrogenase subunit VorB, at 1,256,753 to 1,257,808
_RS06540
MMP_RS06545: MMP_RS06545 - ferredoxin family protein, at 1,257,819 to 1,258,058
_RS06545
MMP_RS06550: MMP_RS06550 - AMP-binding protein, at 1,258,142 to 1,259,815
_RS06550
MMP_RS06555: MMP_RS06555 - cupin domain-containing protein, at 1,259,867 to 1,260,421
_RS06555
MMP_RS06560: MMP_RS06560 - hypothetical protein, at 1,260,684 to 1,261,130
_RS06560
Group
Condition
MMP
_RS06540
MMP
_RS06545
MMP
_RS06550
MMP
_RS06555
MMP
_RS06560
nutrient t1
Mc formate, casamino free, with 10mM L-Methionine
-0.6
-0.9
-0.5
-1.2
+0.0
formate no stress control
Formate no stress control
-1.7
-1.7
+0.2
+0.3
-0.0
formate no stress control
Formate no stress control
-1.4
-2.0
+0.2
+0.3
+0.2
formate no stress control
Formate no stress control
-1.4
-1.6
+0.2
+0.3
+0.2
nitrogen source
H2 N-free with 5mM Inosine
-0.5
+0.6
-0.9
-1.0
+0.4
stress
Formate 50 mM hypophosphite
-1.4
-0.9
+0.3
+0.6
+0.2
nitrogen source
H2 N-free with 10mM Uridine
-1.9
-0.1
-0.1
+0.9
+0.2
nitrogen source
H2 N-free with 10mM L-Methionine
+1.6
+0.4
-0.0
-0.9
-0.2
nitrogen source
H2 N-free with 10mM L-Methionine
+1.4
+0.7
+0.2
-0.8
-0.1
nutrient t2
H2 deepwell acetate and casamino FREE
+0.5
+0.9
+1.0
-1.0
+0.3
nutrient t2
Formate deepwell acetate FREE
+1.1
+1.0
+0.5
-0.5
+0.1
stress
McCas_formate_complete 2-bromoethanesulfonic 0.1 mM
+3.0
-0.3
-0.2
-0.5
+0.1
stress
Formate 100 mM hypophosphite
+1.2
+1.0
-0.5
+0.3
+0.4
stress
Formate McCas no stress control 2
+1.8
+0.6
+0.6
-0.6
+0.0
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
-0.2
+0.5
+0.1
+2.1
+0.2
stress
McCas_H2_complete sulfate 125 mM
+2.3
+0.8
+0.1
-0.5
-0.0
stress
McCas_formate_complete 3-nitroxypropanol 0.000416666666666667 mM
+0.6
+0.8
+0.4
+1.3
-0.2
stress
McCas_formate_complete Rifampicin 0.5 mM
+0.4
+0.8
+0.5
+1.3
-0.2
stress
McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM
+1.0
+1.5
+0.2
+0.2
+0.2
stress
McCas_formate_complete hypophosphite 125 mM
+1.4
+0.9
+0.8
-0.1
+0.1
stress
McCas_formate_complete Econazole nitrate salt 0.02 mM
+1.3
+0.7
+0.8
+0.4
-0.0
stress
McCas_formate_complete Calcium Chloride Dihydrate 166.666666666667 mM
+0.8
+0.7
+0.9
+1.0
-0.0
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
+0.4
+0.3
+0.4
+2.0
+0.4
stress
H2 50 mM hypophosphite
+2.0
-0.0
+0.8
+0.7
-0.1
stress
Formate with nitrate 62.5 mM
+0.4
+0.8
+0.9
+1.3
+0.0
nutrient t2
H2 deepwell acetate and vitamin FREE
+1.4
+0.4
+0.9
+0.6
+0.4
stress
Formate with Nitrofurantoin 0.25 mM
+1.4
+1.0
+0.8
+0.4
+0.3
stress
McCas_formate_complete sulfate 125 mM
+1.3
+0.8
+0.7
+1.3
-0.2
stress
McCas_H2_complete Chloride 250 mM
+2.7
-0.1
+0.1
+1.7
+0.4
stress
McCas_formate_complete Rifampicin 0.5 mM
+2.1
+1.4
+0.9
+1.2
+0.4
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