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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS06525 and MMP_RS06530 are separated by 39 nucleotides
MMP_RS06530 and MMP_RS06535 are separated by 84 nucleotides
MMP_RS06535 and MMP_RS06540 are separated by 1 nucleotides
MMP_RS06540 and MMP_RS06545 are separated by 10 nucleotides
MMP_RS06525: MMP_RS06525 - YciI family protein, at 1,253,581 to 1,253,871
_RS06525
MMP_RS06530: MMP_RS06530 - bifunctional hexulose-6-phosphate synthase/ribonuclease regulator, at 1,253,911 to 1,255,227
_RS06530
MMP_RS06535: MMP_RS06535 - 2-oxoacid:acceptor oxidoreductase family protein, at 1,255,312 to 1,256,751
_RS06535
MMP_RS06540: MMP_RS06540 - 3-methyl-2-oxobutanoate dehydrogenase subunit VorB, at 1,256,753 to 1,257,808
_RS06540
MMP_RS06545: MMP_RS06545 - ferredoxin family protein, at 1,257,819 to 1,258,058
_RS06545
Group
Condition
MMP
_RS06525
MMP
_RS06530
MMP
_RS06535
MMP
_RS06540
MMP
_RS06545
formate no stress control
Formate no stress control
+0.1
-0.0
-2.3
-1.7
-1.7
formate no stress control
Formate no stress control
-0.4
+0.1
-2.2
-1.4
-2.0
formate no stress control
Formate no stress control
-0.5
-0.1
-1.6
-1.4
-1.6
natural competence
H2 McCas- cells grown in liquid medium with neomycin
-3.7
-0.5
+0.2
-0.1
-0.0
no stress control
McCas_H2_complete no stress control
-1.1
-0.9
-0.8
+0.7
-0.7
no stress control
McCas_H2_complete no stress control
-2.0
-0.5
-0.8
+0.4
+0.5
nutrient t2
Formate deepwell autotrophic conditions
-0.9
-2.1
-0.1
+0.6
+0.4
stress
McCas_formate_complete metavanadate 4.54545454545455 mM
-3.1
+0.3
-0.1
+0.4
+0.5
stress
McCas_H2_complete metavanadate 4.54545454545455 mM
-2.1
-0.7
-0.7
+1.7
-0.1
stress
McCas_H2_complete Chloride 250 mM
-2.8
-0.5
-0.2
+2.7
-0.1
nitrogen source
H2 N-free with 10mM L-Isoleucine
-1.6
+0.4
-0.5
+0.8
+0.9
stress
McCas_H2_complete Chlorpromazine 0.0333333333333333 mM
+0.2
-0.5
-1.5
+1.3
+0.6
stress
McCas_formate_complete nitrate 35.7142857142857 mM
+0.8
+1.4
+0.5
-1.5
-0.7
stress
Formate with Bacitracin 15.6 uM
-2.3
+1.3
+0.7
+0.5
+0.6
stress
McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM
-0.8
-0.3
-0.7
+1.0
+1.5
nitrogen source
H2 N-free with 10mM NAG
+1.6
-0.9
-0.7
+0.5
+0.4
stress
McCas_H2_complete Hydroxylamine 1.04166666666667 mM
+1.3
-0.7
-0.6
+1.1
+0.3
stress
Formate with Bacitracin 15.6 uM
-1.3
+1.2
+0.6
+0.7
+0.6
nitrogen source
H2 N-free with 10mM L-Methionine
-1.0
+0.8
+0.3
+1.4
+0.7
stress
McCas_H2_complete sulfate 125 mM
+0.2
+0.4
-0.6
+2.3
+0.8
stress
Formate with Nitrofurantoin 0.25 mM
-1.3
+1.6
+1.5
+1.0
+0.4
stress
H2 50 mM hypophosphite
-0.3
+1.9
+1.7
+0.0
+0.6
nutrient t2
H2 deepwell acetate and casamino FREE
+0.9
+1.1
+0.7
+0.5
+0.9
stress
Formate with Nitrofurantoin 0.25 mM
-1.1
+1.4
+1.5
+1.4
+1.0
stress
McCas_H2_complete 1,2-dimethyl-5-nitroimidazole 0.00833333333333333 mM
+5.1
-0.5
-0.8
+0.4
+0.1
stress
Formate 100 mM hypophosphite
-0.1
+1.1
+1.0
+1.2
+1.0
stress
McCas_formate_complete Rifampicin 0.5 mM
+0.3
+0.1
+0.4
+2.1
+1.4
stress
Formate with nitrate 62.5 mM
+0.3
+1.9
+1.0
+0.4
+0.8
stress
Formate McCas no stress control 2
+0.8
+1.0
+0.7
+1.8
+0.6
stress
H2 50 mM hypophosphite
+0.1
+1.6
+1.8
+2.0
-0.0
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