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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS06510 and MMP_RS06515 are separated by 96 nucleotides
MMP_RS06515 and MMP_RS06520 are separated by 138 nucleotides
MMP_RS06520 and MMP_RS06525 are separated by 16 nucleotides
MMP_RS06525 and MMP_RS06530 are separated by 39 nucleotides
MMP_RS06510: MMP_RS06510 - Glu-tRNA(Gln) amidotransferase subunit GatD, at 1,250,346 to 1,251,602
_RS06510
MMP_RS06515: MMP_RS06515 - UPF0489 family protein, at 1,251,699 to 1,252,409
_RS06515
MMP_RS06520: MMP_RS06520 - DUF1786 domain-containing protein, at 1,252,548 to 1,253,564
_RS06520
MMP_RS06525: MMP_RS06525 - YciI family protein, at 1,253,581 to 1,253,871
_RS06525
MMP_RS06530: MMP_RS06530 - bifunctional hexulose-6-phosphate synthase/ribonuclease regulator, at 1,253,911 to 1,255,227
_RS06530
Group
Condition
MMP
_RS06510
MMP
_RS06515
MMP
_RS06520
MMP
_RS06525
MMP
_RS06530
natural competence
H2 McCas- cells grown in liquid medium with neomycin
N.D.
+0.5
-0.0
-3.7
-0.5
stress
McCas_H2_complete Chlorite 1.25 mM
N.D.
-0.0
-0.4
-2.4
-0.5
stress
McCas_H2_complete Chloride 250 mM
N.D.
+0.3
-0.1
-2.8
-0.5
no stress control
McCas_H2_complete no stress control
N.D.
-1.0
+0.1
-1.1
-0.9
stress
McCas_formate_complete metavanadate 4.54545454545455 mM
N.D.
+0.3
-0.2
-3.1
+0.3
nitrogen source
H2 N-free with 10mM B-Alanine
N.D.
+0.1
+0.2
-2.6
-0.4
nutrient t2
Formate deepwell autotrophic conditions
N.D.
+0.1
+0.3
-0.9
-2.1
stress
McCas_H2_complete Rifampicin 0.5 mM
N.D.
-0.7
+0.5
-1.1
-1.2
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
N.D.
-1.0
+0.1
-2.0
+0.5
no stress control
McCas_H2_complete no stress control
N.D.
-0.3
+0.6
-2.0
-0.5
stress
McCas_H2_complete Anhydrotetracycline 0.05 mM
N.D.
-0.2
+0.8
-1.1
-1.1
stress
McCas_formate_complete gold (III) chloride 0.0714285714285714 mM
N.D.
-1.1
+1.0
-1.6
+0.2
stress
McCas_H2_complete metavanadate 4.54545454545455 mM
N.D.
+1.0
+0.3
-2.1
-0.7
stress
McCas_H2_complete silver chloride 0.5 mM
N.D.
+1.1
+0.1
-1.1
-1.4
stress
McCas_H2_complete metronidazole 0.000833333333333333
N.D.
+0.9
+0.6
-2.1
-0.6
stress
McCas_H2_complete phosphate monobasic 83.3333333333333 mM
N.D.
+0.9
+0.6
-1.0
-1.0
stress
Formate with Bacitracin 15.6 uM
N.D.
+0.5
+0.1
-2.3
+1.3
stress
McCas_H2_complete 2-bromoethanesulfonic 0.00833333333333333 mM
N.D.
+0.7
+1.2
-1.5
-0.6
stress
Formate with Nitrofurantoin 0.25 mM
N.D.
-0.7
+0.3
-1.3
+1.6
stress
Formate with Nitrofurantoin 0.25 mM
N.D.
-0.4
+0.3
-1.1
+1.4
stress
McCas_H2_complete Cesium chloride 41.6666666666667 mM
N.D.
-1.0
+1.0
-0.8
+1.1
no stress control
McCas_H2_complete no stress control
N.D.
+1.8
+0.5
-1.2
-0.5
stress
Formate McCas no stress control 2
N.D.
-0.7
+0.9
+0.8
+1.0
stress
McCas_H2_complete dimetridazole 0.000833333333333333 mM
N.D.
+2.0
+1.1
+0.1
-0.8
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
N.D.
+0.7
+0.5
+0.6
+1.4
stress
Formate with nitrate 62.5 mM
N.D.
+0.5
+0.6
+0.5
+1.6
stress
Formate with nitrate 62.5 mM
N.D.
+0.8
+0.4
+0.3
+1.9
stress
McCas_formate_complete Novobiocin 0.025 mM
N.D.
+0.6
+0.6
+2.0
+0.2
stress
McCas_H2_complete 1,2-dimethyl-5-nitroimidazole 0.00833333333333333 mM
N.D.
-0.5
+0.3
+5.1
-0.5
stress
McCas_formate_complete nitrate 35.7142857142857 mM
N.D.
+1.8
+0.3
+0.8
+1.4
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