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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS05820 and MMP_RS05825 are separated by 31 nucleotides
MMP_RS05825 and MMP_RS05830 are separated by 41 nucleotides
MMP_RS05830 and MMP_RS05835 are separated by 114 nucleotides
MMP_RS05835 and MMP_RS05840 are separated by 74 nucleotides
MMP_RS05820: MMP_RS05820 - RNA-binding transcriptional accessory protein, at 1,116,933 to 1,119,074
_RS05820
MMP_RS05825: MMP_RS05825 - peptidyl-prolyl cis-trans isomerase, at 1,119,106 to 1,119,717
_RS05825
MMP_RS05830: MMP_RS05830 - peptidyl-prolyl cis-trans isomerase, at 1,119,759 to 1,120,247
_RS05830
MMP_RS05835: MMP_RS05835 - secondary thiamine-phosphate synthase enzyme YjbQ, at 1,120,362 to 1,120,760
_RS05835
MMP_RS05840: MMP_RS05840 - peptide chain release factor aRF-1, at 1,120,835 to 1,122,094
_RS05840
Group
Condition
MMP
_RS05820
MMP
_RS05825
MMP
_RS05830
MMP
_RS05835
MMP
_RS05840
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
+0.1
-0.4
-0.1
-5.7
N.D.
stress
McCas_formate_complete Fluorophosphate 62.5 mM
+0.3
-0.2
-0.9
-5.1
N.D.
stress
McCas_H2_complete Chloride 250 mM
+0.3
+1.1
-0.6
-5.5
N.D.
stress
McCas_H2_complete 5-Fluorouracil 0.00833333333333333 mM
+0.3
-0.6
-0.3
-3.8
N.D.
stress
McCas_formate_complete Sulfaquinoxaline 0.1 mM
+0.1
+0.5
+0.1
-5.1
N.D.
stress
McCas_formate_complete mercury (II) chloride 0.227272727272727 mM
+0.7
+0.3
-0.2
-5.0
N.D.
stress
McCas_H2_complete Spiramycin 0.1 mM
+0.2
+0.2
-0.2
-4.3
N.D.
nitrogen source
H2 N-free with 10mM L-Threonine
-0.3
-0.8
-0.3
-2.8
N.D.
stress
McCas_formate_complete Chloride 250 mM
-0.5
-0.0
-0.8
-2.3
N.D.
stress
McCas_H2_complete Thioridazine 0.1 mM
-0.1
-1.0
-0.0
-2.4
N.D.
nitrogen source
H2 N-free with 10mM NAG
-0.2
-0.6
-0.8
-1.8
N.D.
no stress control
McCas_H2_complete no stress control
-0.0
-0.2
-0.5
-2.5
N.D.
nutrient t2
H2 deepwell casamino FREE
+0.4
+0.4
-0.3
-3.6
N.D.
stress
Formate 100 mM hypophosphite
-0.3
+0.1
-1.4
-1.4
N.D.
stress
McCas_H2_complete Phenazine methosulfate 0.0333333333333333 mM
-0.0
-0.3
-0.0
-2.7
N.D.
stress
McCas_formate_complete Polymyxin B sulfate 0.1 mM
-0.1
-0.1
-0.6
-2.3
N.D.
stress
McCas_H2_complete metronidazole 0.000833333333333333
+0.6
-0.6
-0.4
-2.5
N.D.
stress
McCas_formate_complete sulfate 125 mM
+0.3
+0.7
-1.5
-2.0
N.D.
stress
McCas_H2_complete 5-Fluorouracil 0.00833333333333333 mM
-0.4
-0.5
+1.0
-2.2
N.D.
stress
McCas_formate_complete 3-nitroxypropanol 0.000416666666666667 mM
-0.1
+0.8
-1.2
-1.4
N.D.
nitrogen source
H2 N-free with 10mM L-Serine
+0.4
-0.1
+0.2
-2.4
N.D.
stress
McCas_formate_complete Novobiocin 0.025 mM
+0.3
+0.7
-0.7
-2.1
N.D.
nutrient t2
H2 deepwell acetate and vitamin FREE
+0.4
+0.8
+0.2
-3.1
N.D.
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
+0.0
+1.4
-0.6
-1.6
N.D.
nitrogen source
H2 N-free with 10mM B-Alanine
+0.3
+0.5
+0.6
-1.8
N.D.
stress
McCas_H2_complete Benzethonium chloride 0.00625 mM
-0.4
+0.7
+0.8
-1.3
N.D.
stress
McCas_H2_complete 8-hydroxy-nitroquinolone 0.0166666666666667 mM
+0.8
+0.9
+0.3
-2.1
N.D.
no stress control
McCas_H2_complete no stress control
+0.2
+0.5
-0.9
+1.7
N.D.
rich t2
H2 McCas deepwell complete
+0.4
+1.6
+0.1
+1.5
N.D.
no stress control
McCas_H2_complete no stress control
+0.4
+0.6
+0.8
+2.1
N.D.
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