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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS05135 and MMP_RS05140 are separated by 118 nucleotides
MMP_RS05140 and MMP_RS05145 overlap by 4 nucleotides
MMP_RS05145 and MMP_RS05150 are separated by 9 nucleotides
MMP_RS05150 and MMP_RS05155 are separated by 157 nucleotides
MMP_RS05135: MMP_RS05135 - hypothetical protein, at 980,566 to 981,087
_RS05135
MMP_RS05140: MMP_RS05140 - helix-turn-helix transcriptional regulator, at 981,206 to 981,406
_RS05140
MMP_RS05145: MMP_RS05145 - hypothetical protein, at 981,403 to 981,789
_RS05145
MMP_RS05150: MMP_RS05150 - hypothetical protein, at 981,799 to 982,230
_RS05150
MMP_RS05155: MMP_RS05155 - hypothetical protein, at 982,388 to 982,651
_RS05155
Group
Condition
MMP
_RS05135
MMP
_RS05140
MMP
_RS05145
MMP
_RS05150
MMP
_RS05155
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
-0.2
-2.1
-1.4
+0.4
-0.8
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
+0.1
-1.7
-1.1
-0.2
+0.1
nutrient t2
H2 deepwell vitamin FREE
-0.7
-0.9
-0.3
-0.6
+0.1
stress
Formate with Bacitracin 15.6 uM
-0.2
-1.1
-0.2
-0.4
-0.2
stress
Formate with nitrate 62.5 mM
+0.1
-0.8
-0.5
-0.4
-0.4
nitrogen source
H2 N-free with 10mM Glycine
-0.2
-1.2
-0.7
-0.1
+0.3
nitrogen source
H2 N-free with 10mM L-Lysine
-0.4
-0.4
-0.8
-0.3
+0.3
nitrogen source
H2 N-free with 10mM Putrescine
-0.3
-0.5
-0.9
-0.1
+0.4
nitrogen source
H2 N-free with 10mM Thymidine
-0.3
-0.7
-0.8
+0.0
+0.4
nitrogen source
H2 N-free with 10mM L-Leucine
-0.3
-0.4
-0.9
-0.2
+0.5
nitrogen source
H2 N-free with 10mM NAG
+0.2
-0.9
-0.7
-0.2
+0.4
nitrogen source
H2 N-free with 10mM Thymidine
-0.3
-0.5
-0.7
+0.6
+0.1
stress
McCas_H2_complete sulfate 125 mM
-0.7
+0.3
-0.6
-0.2
+0.6
stress
McCas_H2_complete Irgasan 0.025 mM
-0.0
+1.0
-0.4
+0.1
-0.6
stress
McCas_formate_complete Spiramycin 0.1 mM
+0.4
+0.6
-0.1
+0.4
-1.2
stress
McCas_formate_complete 2-bromoethanesulfonic 0.00833333333333333 mM
+0.2
-1.2
-0.0
+0.8
+0.6
stress
McCas_H2_complete sodium nitrite 1.04166666666667 mM
-0.1
+1.6
-0.5
+0.0
-0.5
stress
McCas_H2_complete Sulfaquinoxaline 0.1 mM
-0.5
+0.4
-0.3
+0.7
+0.4
stress
McCas_H2_complete phosphate monobasic 83.3333333333333 mM
-0.6
+0.6
-0.1
+0.3
+0.7
stress
McCas_H2_complete 3-nitroxypropanol 0.00833333333333333 mM
-0.2
+1.4
-0.4
+0.1
+0.1
stress
McCas_H2_complete Chloride 250 mM
+0.0
+1.7
-0.2
-0.3
-0.0
stress
McCas_H2_complete Chloride 250 mM
-0.3
+1.6
-0.2
-0.2
+0.3
natural competence
H2 McCas- cells grown in liquid medium with neomycin
-0.1
-0.4
+1.1
+0.4
+0.2
stress
Formate 100 mM hypophosphite
+0.0
+0.9
+0.0
+0.7
-0.4
natural competence
H2 McCas- cells incubated with 5000 ng DNA (pDNA pLW40neo) then transferred and grown in liquid medium with neomycin
+0.1
-0.0
+2.1
+0.1
-0.5
no stress control
McCas_H2_complete no stress control
-0.1
+1.0
+0.0
+0.6
+0.6
stress
McCas_H2_complete metronidazole 0.000833333333333333
-0.3
+1.8
-0.2
+0.3
+0.7
natural competence
H2 McCas- cells grown in liquid medium with neomycin
+0.1
+0.1
+2.3
+0.4
+0.0
natural competence
H2 McCas- cells grown in liquid medium with neomycin
+0.2
-0.3
+2.4
+0.9
+0.4
stress
Formate with Neomycin 12.5 mM
+0.3
-0.1
+2.7
+0.7
+0.0
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