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Cofit
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Homologs
Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS04545 and MMP_RS04550 are separated by 452 nucleotides
MMP_RS04550 and MMP_RS04555 are separated by 9 nucleotides
MMP_RS04555 and MMP_RS04560 are separated by 22 nucleotides
MMP_RS04560 and MMP_RS04565 are separated by 88 nucleotides
MMP_RS04545: MMP_RS04545 - methyltransferase domain-containing protein, at 866,661 to 867,458
_RS04545
MMP_RS04550: MMP_RS04550 - S-layer protein, at 867,911 to 869,512
_RS04550
MMP_RS04555: MMP_RS04555 - 7 8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG, at 869,522 to 870,580
_RS04555
MMP_RS04560: MMP_RS04560 - carboxylating nicotinate-nucleotide diphosphorylase, at 870,603 to 871,442
_RS04560
MMP_RS04565: MMP_RS04565 - ribonuclease P, at 871,531 to 871,923
_RS04565
Group
Condition
MMP
_RS04545
MMP
_RS04550
MMP
_RS04555
MMP
_RS04560
MMP
_RS04565
nutrient t2
H2 deepwell casamino FREE
-0.2
+1.2
N.D.
N.D.
N.D.
nutrient t1
H2 deepwell vitamin and casamino FREE
-0.2
+1.3
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell vitamin and casamino FREE
-0.2
+1.4
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell casamino FREE
-0.1
+1.3
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell casamino FREE
-0.2
+1.4
N.D.
N.D.
N.D.
iron
Iron excess (5x) , H2 media
-0.1
+1.3
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell autotrophic conditions
+0.0
+1.4
N.D.
N.D.
N.D.
nutrient t1
H2 deepwell autotrophic conditions
-0.1
+1.5
N.D.
N.D.
N.D.
nutrient t1
H2 deepwell autotrophic conditions
-0.1
+1.5
N.D.
N.D.
N.D.
nutrient t1
H2 deepwell acetate and casamino FREE
-0.1
+1.6
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell vitamin and casamino FREE
-0.1
+1.6
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell autotrophic conditions
-0.1
+1.7
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell autotrophic conditions
-0.1
+1.7
N.D.
N.D.
N.D.
nutrient t1
H2 deepwell acetate and casamino FREE
-0.1
+1.9
N.D.
N.D.
N.D.
nutrient t1
H2 deepwell acetate and casamino FREE
-0.1
+1.9
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell acetate and casamino FREE
-0.1
+1.9
N.D.
N.D.
N.D.
nutrient t1
H2 deepwell acetate and casamino FREE
-0.2
+2.0
N.D.
N.D.
N.D.
nutrient t1
H2 deepwell acetate and casamino FREE
-0.1
+1.9
N.D.
N.D.
N.D.
nutrient t1
H2 deepwell autotrophic conditions
-0.1
+1.9
N.D.
N.D.
N.D.
nutrient t1
H2 deepwell autotrophic conditions
-0.1
+1.9
N.D.
N.D.
N.D.
nutrient t1
H2 deepwell autotrophic conditions
-0.1
+2.0
N.D.
N.D.
N.D.
nutrient t1
H2 deepwell acetate and casamino FREE
-0.0
+2.0
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell acetate and casamino FREE
-0.0
+2.0
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell autotrophic conditions
-0.2
+2.2
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell autotrophic conditions
-0.1
+2.2
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell acetate and casamino FREE
-0.0
+2.2
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell acetate and casamino FREE
-0.2
+2.3
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell acetate and casamino FREE
-0.1
+2.3
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell autotrophic conditions
-0.1
+2.4
N.D.
N.D.
N.D.
nutrient t2
H2 deepwell acetate and casamino FREE
-0.0
+2.4
N.D.
N.D.
N.D.
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