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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS04505 and MMP_RS04510 are separated by 15 nucleotides
MMP_RS04510 and MMP_RS04515 are separated by 13 nucleotides
MMP_RS04515 and MMP_RS04520 are separated by 443 nucleotides
MMP_RS04520 and MMP_RS04525 are separated by 31 nucleotides
MMP_RS04505: MMP_RS04505 - glycine betaine ABC transporter substrate-binding protein, at 857,796 to 858,683
_RS04505
MMP_RS04510: MMP_RS04510 - ABC transporter permease subunit, at 858,699 to 859,532
_RS04510
MMP_RS04515: MMP_RS04515 - betaine/proline/choline family ABC transporter ATP-binding protein, at 859,546 to 860,715
_RS04515
MMP_RS04520: MMP_RS04520 - nucleoside deaminase, at 861,159 to 861,596
_RS04520
MMP_RS04525: MMP_RS04525 - D-2-hydroxyacid dehydrogenase, at 861,628 to 862,584
_RS04525
Group
Condition
MMP
_RS04505
MMP
_RS04510
MMP
_RS04515
MMP
_RS04520
MMP
_RS04525
nitrogen source
H2 N-free with 10mM L-Isoleucine
-0.2
-0.1
-0.4
-1.1
-0.0
nutrient t2
H2 deepwell acetate and vitamin FREE
-0.4
-0.1
-0.3
-0.9
-0.1
stress
McCas_H2_complete selenate 62.5 mM
-0.1
-0.5
-0.1
-0.9
-0.2
nitrogen source
H2 N-free with 10mM L-Glutamic
-0.4
-0.2
-0.3
-0.4
-0.3
nitrogen source
H2 N-free with 10mM Cytidine
-0.2
-0.5
-0.4
-0.4
-0.1
stress
McCas_H2_complete 2-Mercaptopyridine N-oxide 0.02 mM
-0.3
-0.5
-0.3
-0.3
-0.1
nitrogen source
H2 N-free with 10mM Thymidine
-0.3
-0.4
-0.6
-0.3
+0.1
nutrient t2
Formate deepwell acetate FREE
-0.0
-0.2
-0.5
-0.8
+0.1
stress
McCas_formate_complete 3-nitroxypropanol 0.00833333333333333 mM
+0.0
-0.4
+0.0
-1.0
-0.2
nitrogen source
H2 N-free with 10mM Uridine
-0.0
+0.2
-0.4
-1.0
-0.0
stress
McCas_H2_complete Bacitracin 0.003125 mM
-0.0
+0.1
-0.4
-1.0
+0.2
nutrient t2
H2 deepwell acetate and vitamin FREE
-0.2
-0.7
-0.1
+0.6
-0.1
nutrient t2
H2 deepwell vitamin FREE
-0.2
-0.4
-0.3
+0.6
-0.0
stress
McCas_H2_complete silver chloride 0.5 mM
-0.1
-0.5
-0.0
+0.6
-0.2
nutrient t2
H2 deepwell vitamin and casamino FREE
-0.2
-0.5
-0.1
+0.8
-0.1
no stress control
McCas_H2_complete no stress control
-0.3
-0.3
-0.1
+0.8
-0.1
stress
McCas_H2_complete Chloride 500 mM
-0.1
-0.6
+0.1
+0.6
+0.2
stress
McCas_H2_complete Ticarcillin 50 mM
+0.0
-0.5
+0.2
+0.7
-0.1
nutrient t2
H2 deepwell acetate and casamino FREE
-0.2
-0.2
-0.1
+0.9
-0.1
stress
McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
-0.1
+0.0
-0.3
+1.0
-0.2
stress
McCas_formate_complete sulfate 125 mM
+0.2
-0.5
-0.1
+0.8
+0.1
nutrient t2
H2 deepwell acetate and casamino FREE
-0.0
-0.3
-0.2
+1.2
+0.1
stress
Formate with Bacitracin 15.6 uM
-0.0
+0.2
+0.2
+0.8
-0.2
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
-0.2
+0.4
+0.1
+0.9
-0.1
natural competence
H2 McCas- cells grown in liquid medium with neomycin
-0.1
+0.2
+0.2
+1.1
-0.1
natural competence
H2 McCas- cells grown in liquid medium with neomycin
-0.1
+0.3
+0.3
+0.9
-0.0
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
+0.2
-0.0
+0.3
+1.0
-0.0
natural competence
H2 McCas- cells grown in liquid medium with neomycin
+0.2
+0.0
+0.4
+1.1
-0.2
stress
McCas_H2_complete 1,2-dimethyl-5-nitroimidazole 0.00833333333333333 mM
-0.3
-0.1
+0.1
+2.1
-0.2
stress
Formate with Neomycin 12.5 mM
+0.7
+0.4
+0.6
+0.5
-0.1
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