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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS04415 and MMP_RS04420 are separated by 254 nucleotides
MMP_RS04420 and MMP_RS04425 are separated by 62 nucleotides
MMP_RS04425 and MMP_RS04430 are separated by 43 nucleotides
MMP_RS04430 and MMP_RS04435 are separated by 27 nucleotides
MMP_RS04415: MMP_RS04415 - peptide-methionine (S)-S-oxide reductase MsrA, at 839,898 to 840,371
_RS04415
MMP_RS04420: MMP_RS04420 - LysE family translocator, at 840,626 to 841,249
_RS04420
MMP_RS04425: MMP_RS04425 - APC family permease, at 841,312 to 842,565
_RS04425
MMP_RS04430: MMP_RS04430 - DUF1847 domain-containing protein, at 842,609 to 843,238
_RS04430
MMP_RS04435: MMP_RS04435 - pyridoxamine 5'-phosphate oxidase family protein, at 843,266 to 843,745
_RS04435
Group
Condition
MMP
_RS04415
MMP
_RS04420
MMP
_RS04425
MMP
_RS04430
MMP
_RS04435
nutrient t2
Formate deepwell autotrophic conditions
-0.1
-1.6
-1.6
-0.0
+0.0
nutrient t2
Formate deepwell autotrophic conditions
-0.2
-1.1
-1.2
-0.1
+0.1
nutrient t2
Formate deepwell autotrophic conditions
-0.3
-1.0
-1.2
+0.0
+0.1
nutrient t2
Formate deepwell acetate and casamino FREE
-0.1
-1.1
-1.2
+0.1
-0.1
nutrient t2
Formate deepwell acetate and casamino FREE
-0.1
-0.9
-1.0
-0.0
+0.0
nutrient t2
Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE
-0.2
-0.6
-1.0
-0.0
-0.1
nutrient t2
Formate deepwell acetate and casamino FREE
-0.2
-0.7
-0.9
-0.1
+0.1
nutrient t2
H2 deepwell autotrophic conditions
+0.1
-0.9
-0.8
+0.1
-0.3
nutrient t2
H2 deepwell vitamin and casamino FREE
-0.1
-0.9
-0.7
+0.1
-0.1
nutrient t2
H2 deepwell autotrophic conditions
+0.1
-1.1
-0.9
+0.3
-0.1
nutrient t2
H2 deepwell vitamin and casamino FREE
+0.1
-1.0
-0.6
+0.1
-0.1
stress
McCas_formate_complete nitrate 35.7142857142857 mM
+0.4
-1.0
-0.1
-0.3
-0.4
nutrient t2
H2 deepwell autotrophic conditions
-0.1
-0.9
-0.7
+0.3
+0.1
stress
McCas_H2_complete sulfate 125 mM
-0.6
-1.1
+0.2
+0.2
-0.1
nutrient t2
H2 deepwell autotrophic conditions
+0.2
-0.9
-0.8
+0.3
-0.0
stress
McCas_H2_complete Hydroxylamine 1.04166666666667 mM
+0.3
-0.8
-0.1
-0.3
-0.4
nutrient t2
H2 deepwell vitamin and casamino FREE
-0.2
-0.5
-0.7
+0.3
+0.1
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
+0.1
-0.8
-0.4
+0.3
-0.1
nutrient t2
H2 deepwell acetate and casamino FREE
+0.2
-0.9
-0.3
+0.3
-0.2
stress
McCas_formate_complete sulfate 125 mM
+0.4
-0.9
-0.3
+0.0
-0.1
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
-0.2
-0.8
+0.5
-0.4
+0.3
nutrient t2
H2 deepwell autotrophic conditions
+0.3
-1.1
-0.5
+0.5
+0.1
stress
McCas_H2_complete Cesium chloride 41.6666666666667 mM
-0.4
-0.8
+0.1
+0.3
+0.3
nutrient t2
H2 deepwell acetate and casamino FREE
+0.3
-0.9
-0.4
+0.6
-0.1
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
+0.6
-0.8
-0.3
-0.1
+0.0
stress
McCas_H2_complete sodium bromide 250 mM
+0.3
-0.9
+0.3
-0.1
+0.1
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
-0.4
+0.1
+0.3
-0.4
+0.5
stress
McCas_H2_complete Cadmium chloride hemipentahydrate 0.555555555555556 mM
+0.1
+0.8
+0.1
-0.8
+0.1
stress
McCas_H2_complete Bacitracin 0.003125 mM
+0.6
+0.5
-0.1
+0.3
-0.3
nitrogen source
H2 N-free with 2mM Adenosine
+0.2
+1.7
+1.6
+0.0
+0.0
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