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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS04180 and MMP_RS04185 are separated by 11 nucleotides
MMP_RS04185 and MMP_RS04190 are separated by 87 nucleotides
MMP_RS04190 and MMP_RS04195 are separated by 217 nucleotides
MMP_RS04195 and MMP_RS04200 are separated by 30 nucleotides
MMP_RS04180: MMP_RS04180 - iron-containing alcohol dehydrogenase, at 794,946 to 796,115
_RS04180
MMP_RS04185: MMP_RS04185 - aldo/keto reductase, at 796,127 to 797,239
_RS04185
MMP_RS04190: MMP_RS04190 - hypothetical protein, at 797,327 to 797,842
_RS04190
MMP_RS04195: MMP_RS04195 - flavodoxin, at 798,060 to 798,596
_RS04195
MMP_RS04200: MMP_RS04200 - DUF111 family protein, at 798,627 to 799,346
_RS04200
Group
Condition
MMP
_RS04180
MMP
_RS04185
MMP
_RS04190
MMP
_RS04195
MMP
_RS04200
stress
McCas_formate_complete Chloride 250 mM
-0.1
+0.2
-0.5
-2.6
+0.4
stress
McCas_formate_complete Antimycin A 0.01 mM
-0.1
-0.2
+0.0
-1.8
-0.2
stress
McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
+0.2
+0.2
+0.1
-1.9
-0.6
natural competence
H2 McCas- cells incubated with 5000 ng DNA (pDNA pLW40neo) then transferred and grown in liquid medium with neomycin
-0.2
-0.8
-0.4
-0.3
-0.3
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
-0.5
-0.5
-0.1
-0.3
-0.5
nitrogen source
H2 N-free with 10mM L-Alanine
+0.1
-0.2
-0.2
-1.3
-0.4
stress
McCas_H2_complete selenate 62.5 mM
+0.0
-0.2
+0.1
-1.0
-0.7
stress
McCas_formate_complete Anhydrotetracycline 0.05 mM
+0.2
-0.1
-0.2
-1.5
+0.1
stress
McCas_formate_complete 3-nitroxypropanol 0.000416666666666667 mM
-0.5
+0.1
-0.3
-1.2
+0.3
nitrogen source
H2 N-free with 5mM Inosine
-0.0
+0.3
+0.1
-1.8
-0.1
nitrogen source
H2 N-free with 10mM L-tyrosine
+0.1
-0.5
+0.5
-1.1
-0.5
stress
McCas_H2_complete Chlorate 250 mM
-0.3
+0.1
+0.4
-0.6
-0.8
stress
McCas_H2_complete Hydroxylamine 1.04166666666667 mM
-0.2
+0.3
+0.3
-0.8
-0.6
stress
McCas_H2_complete Chlorpromazine 0.0333333333333333 mM
-0.1
+0.2
+0.4
-1.0
-0.5
stress
McCas_H2_complete Sulfaquinoxaline 0.1 mM
+0.3
-0.1
+0.4
-0.5
-0.9
stress
McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM
+0.4
+0.3
+0.5
-1.2
-0.6
nutrient t2
H2 deepwell vitamin FREE
-0.1
-0.1
-0.1
+0.7
-1.1
stress
McCas_formate_complete metavanadate 4.54545454545455 mM
+0.1
-0.2
-0.3
-1.3
+1.1
stress
McCas_H2_complete perchlorate 250 mM
+0.1
+0.1
+0.6
-0.8
-0.4
stress
McCas_H2_complete nitrate 35.7142857142857 mM
+0.1
-0.1
+0.7
-0.7
-0.5
stress
McCas_H2_complete Chloride 250 mM
-0.3
-0.1
+1.2
-0.5
-0.2
no stress control
McCas_H2_complete no stress control
+0.0
+0.7
+0.7
-0.7
-0.7
nitrogen source
Formate N-free with 2mM Adenosine
+0.1
-0.4
-0.5
+0.8
+0.3
stress
McCas_H2_complete Thioridazine 0.1 mM
-0.1
+0.2
+0.9
-0.8
-0.0
stress
McCas_H2_complete sulfate 125 mM
+0.1
-0.3
+1.4
-0.4
-0.0
stress
McCas_H2_complete Spiramycin 0.1 mM
-0.4
+0.1
+0.3
+1.1
-0.3
nitrogen source
H2 N-free with 10mM NAG
-0.2
-0.3
+0.5
+1.0
+0.2
stress
McCas_H2_complete Irgasan 0.025 mM
+0.5
+0.3
+0.9
-0.5
+0.1
stress
McCas_formate_complete Chloride 250 mM
-0.1
+0.4
+0.8
+0.5
-0.3
stress
McCas_H2_complete 2-bromoethanesulfonic 0.00833333333333333 mM
+0.3
+0.6
+0.7
+0.2
-0.3
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