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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS03855 and MMP_RS03860 are separated by 81 nucleotides
MMP_RS03860 and MMP_RS03865 are separated by 937 nucleotides
MMP_RS03865 and MMP_RS08965 are separated by 93 nucleotides
MMP_RS08965 and MMP_RS03870 are separated by 20 nucleotides
MMP_RS03855: MMP_RS03855 - aspartate dehydrogenase, at 729,402 to 730,205
_RS03855
MMP_RS03860: MMP_RS03860 - hypothetical protein, at 730,287 to 731,216
_RS03860
MMP_RS03865: MMP_RS03865 - aspartate/glutamate racemase family protein, at 732,154 to 732,858
_RS03865
MMP_RS08965: MMP_RS08965 - hypothetical protein, at 732,952 to 733,107
_RS08965
MMP_RS03870: MMP_RS03870 - purine NTPase, at 733,128 to 733,808
_RS03870
Group
Condition
MMP
_RS03855
MMP
_RS03860
MMP
_RS03865
MMP
_RS08965
MMP
_RS03870
nitrogen source
H2 N-free with 5mM Inosine
N.D.
-0.9
+0.1
N.D.
-0.6
stress
McCas_formate_complete hypophosphite 125 mM
N.D.
-0.4
-0.4
N.D.
-0.3
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations
N.D.
-0.9
-0.2
N.D.
+0.1
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 20 generations
N.D.
-0.8
-0.1
N.D.
+0.2
stress
McCas_formate_complete Econazole nitrate salt 0.02 mM
N.D.
-0.4
-0.5
N.D.
+0.3
nitrogen source
H2 N-free with 10mM Cytidine
N.D.
-0.2
+0.3
N.D.
-0.6
nitrogen source
H2 N-free with 10mM L-tyrosine
N.D.
-0.5
+0.4
N.D.
-0.4
stress
McCas_formate_complete 3-nitroxypropanol 0.00833333333333333 mM
N.D.
+0.2
+0.3
N.D.
-0.7
stress
McCas_formate_complete Spiramycin 0.1 mM
N.D.
-0.5
-0.1
N.D.
+0.6
nutrient t2
H2 deepwell vitamin and casamino FREE
N.D.
-0.2
-0.3
N.D.
+0.5
nitrogen source
N2 fixation, H2 media
N.D.
+0.1
+0.5
N.D.
-0.4
stress
McCas_H2_complete Econazole nitrate salt 0.02 mM
N.D.
-0.4
+0.2
N.D.
+0.6
stress
McCas_H2_complete sulfate 125 mM
N.D.
+0.1
-0.5
N.D.
+0.8
nutrient t2
H2 deepwell vitamin and casamino FREE
N.D.
-0.2
-0.2
N.D.
+0.8
no stress control
McCas_H2_complete no stress control
N.D.
-0.2
-0.2
N.D.
+0.8
stress
McCas_H2_complete metronidazole 0.000833333333333333
N.D.
+0.4
-0.5
N.D.
+0.6
stress
McCas_H2_complete Nitrofurantoin 0.1 mM
N.D.
+0.2
-0.4
N.D.
+0.5
stress
McCas_H2_complete phosphate monobasic 83.3333333333333 mM
N.D.
-0.3
-0.1
N.D.
+1.2
stress
McCas_H2_complete Cesium chloride 41.6666666666667 mM
N.D.
-0.1
-0.0
N.D.
+0.9
stress
McCas_H2_complete silver chloride 0.5 mM
N.D.
-0.1
+0.2
N.D.
+0.7
stress
McCas_H2_complete Bacitracin 0.003125 mM
N.D.
+0.2
+1.1
N.D.
-0.4
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
N.D.
+0.2
-0.2
N.D.
+0.9
no stress control
McCas_formate_complete no stress control
N.D.
-0.1
+0.4
N.D.
+0.6
stress
McCas_formate_complete Thioridazine 0.05 mM
N.D.
-0.2
+0.2
N.D.
+1.0
stress
McCas_H2_complete 5-Fluorouracil 0.00833333333333333 mM
N.D.
+0.1
+0.2
N.D.
+0.8
stress
McCas_H2_complete Fluorophosphate 62.5 mM
N.D.
-0.2
+0.3
N.D.
+1.0
stress
McCas_H2_complete Chloride 250 mM
N.D.
+0.1
+0.3
N.D.
+0.9
nutrient t2
Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
N.D.
+0.3
+0.2
N.D.
+0.8
stress
McCas_formate_complete metavanadate 4.54545454545455 mM
N.D.
+0.2
+0.9
N.D.
+0.2
stress
McCas_H2_complete sulfate 125 mM
N.D.
+0.7
+0.0
N.D.
+1.0
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