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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS03780 and MMP_RS03785 are separated by 17 nucleotides
MMP_RS03785 and MMP_RS03790 are separated by 139 nucleotides
MMP_RS03790 and MMP_RS03795 are separated by 7 nucleotides
MMP_RS03795 and MMP_RS03800 are separated by 352 nucleotides
MMP_RS03780: MMP_RS03780 - 4Fe-4S binding protein, at 714,854 to 715,381
_RS03780
MMP_RS03785: MMP_RS03785 - cupin domain-containing protein, at 715,399 to 715,743
_RS03785
MMP_RS03790: MMP_RS03790 - hypothetical protein, at 715,883 to 716,317
_RS03790
MMP_RS03795: MMP_RS03795 - YqhA family protein, at 716,325 to 716,882
_RS03795
MMP_RS03800: MMP_RS03800 - hypothetical protein, at 717,235 to 717,468
_RS03800
Group
Condition
MMP
_RS03780
MMP
_RS03785
MMP
_RS03790
MMP
_RS03795
MMP
_RS03800
stress
McCas_formate_complete NO 0.025 mM
-3.8
-0.2
+0.5
+0.0
-1.0
stress
McCas_formate_complete NO 0.025 mM
-3.7
-0.5
+0.4
+0.0
+0.0
nutrient t2
H2 deepwell vitamin FREE
-0.9
-0.9
-0.5
-0.2
-0.4
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
+0.0
-1.9
-0.1
-0.5
-0.4
nitrogen source
H2 N-free with 10mM L-tyrosine
-0.4
-0.4
-0.3
+0.1
-1.3
stress
McCas_formate_complete Chloride 250 mM
-1.4
-1.5
-0.3
+0.2
+0.8
stress
McCas_formate_complete nitrate 35.7142857142857 mM
+0.4
-1.3
+0.3
+0.2
-1.8
stress
McCas_formate_complete Fluorophosphate 62.5 mM
-0.6
-0.4
+0.2
-0.0
-1.3
nutrient t2
H2 deepwell acetate FREE
+0.1
-1.0
-0.7
+0.1
-0.3
stress
McCas_formate_complete Magnesium chloride 250 mM
+0.4
-1.0
-0.2
-0.1
-0.7
nitrogen source
H2 N-free with 10mM L-Serine
-0.9
-0.8
+0.2
-0.2
+0.4
stress
McCas_formate_complete sulfate 125 mM
-0.1
-0.4
+0.6
+0.2
-1.4
stress
McCas_formate_complete 2-bromoethanesulfonic 0.00833333333333333 mM
+0.4
-1.5
-0.0
-0.1
+0.5
stress
Formate with Bacitracin 15.6 uM
-0.3
-0.8
+0.5
-1.2
+0.9
stress
McCas_formate_complete sodium nitrite 0.416666666666667 mM
-0.3
+0.3
+0.7
+0.2
-1.5
stress
Formate McCas no stress control 2
+0.4
-1.4
+0.4
-0.2
+0.0
stress
McCas_H2_complete Calcium Chloride Dihydrate 83.3333333333333 mM
-0.3
+0.2
-0.5
-0.6
+0.7
stress
McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM
+0.4
-0.4
-0.9
+0.1
+0.6
stress
Formate 100 mM hypophosphite
-0.3
-0.4
+1.4
+0.2
-0.8
stress
Formate with Nitrofurantoin 0.25 mM
-1.0
+0.1
+0.6
+0.2
+0.5
no stress control
McCas_H2_complete no stress control
-0.5
+1.3
+0.4
-0.5
-0.3
stress
McCas_H2_complete Benzethonium chloride 0.00625 mM
+0.6
-0.8
+0.3
+0.2
+0.4
stress
Formate 100 mM hypophosphite
-0.1
-0.8
+1.5
+0.2
+0.0
stress
McCas_H2_complete phosphate monobasic 83.3333333333333 mM
-0.0
-0.4
+1.1
-0.4
+0.5
stress
McCas_H2_complete Nitrofurantoin 0.1 mM
-0.6
+0.6
+0.2
-0.1
+0.8
stress
Formate with Bacitracin 15.6 uM
-0.0
+1.5
+0.4
-0.5
-0.1
stress
McCas_H2_complete 1,2-dimethyl-5-nitroimidazole 0.00833333333333333 mM
+0.3
+1.2
+0.5
-0.2
+0.4
stress
McCas_H2_complete 2-bromoethanesulfonic 0.00833333333333333 mM
+0.6
+0.2
+0.8
-0.1
+0.8
natural competence
H2 McCas- cells incubated with 5000 ng DNA (pDNA pLW40neo) then transferred and grown in liquid medium with neomycin
+0.3
+0.8
+0.4
+0.0
+0.8
stress
McCas_H2_complete phosphate monobasic 83.3333333333333 mM
+0.1
+0.3
+1.3
-0.1
+0.7
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