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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS03740 and MMP_RS03745 are separated by 10 nucleotides
MMP_RS03745 and MMP_RS03750 are separated by 13 nucleotides
MMP_RS03750 and MMP_RS03755 are separated by 12 nucleotides
MMP_RS03755 and MMP_RS03760 are separated by 383 nucleotides
MMP_RS03740: MMP_RS03740 - indolepyruvate oxidoreductase subunit beta, at 707,988 to 708,554
_RS03740
MMP_RS03745: MMP_RS03745 - phenylacetate--CoA ligase, at 708,565 to 709,863
_RS03745
MMP_RS03750: MMP_RS03750 - ACT domain-containing protein, at 709,877 to 710,302
_RS03750
MMP_RS03755: MMP_RS03755 - MarR family transcriptional regulator, at 710,315 to 710,851
_RS03755
MMP_RS03760: MMP_RS03760 - hypothetical protein, at 711,235 to 711,585
_RS03760
Group
Condition
MMP
_RS03740
MMP
_RS03745
MMP
_RS03750
MMP
_RS03755
MMP
_RS03760
stress
McCas_formate_complete NO 0.025 mM
+0.3
-0.1
+0.0
-0.0
-3.8
stress
McCas_formate_complete NO 0.025 mM
+0.3
-0.1
+0.3
-0.3
-3.7
rich t2
H2 McCas deepwell complete
+0.2
-0.7
-0.2
-0.5
-0.8
nitrogen source
H2 N-free with 10mM Uridine
+0.1
-0.4
-0.0
-1.8
+0.0
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
-0.7
-0.1
+0.5
-1.8
-0.1
nitrogen source
H2 N-free with 10mM Uridine
+0.2
-0.1
-0.2
-1.9
+0.2
nutrient t2
H2 deepwell acetate and casamino FREE
+0.1
-0.5
-0.7
-0.7
+0.1
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
-0.5
-0.1
+0.3
-1.4
+0.2
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
-0.9
-0.7
+0.6
-0.2
-0.1
stress
Formate 100 mM hypophosphite
+0.0
+0.1
+0.2
-2.3
+0.8
stress
Formate 100 mM hypophosphite
+0.1
-0.0
+0.1
-1.5
+0.3
nutrient t2
H2 deepwell acetate FREE
+0.8
-0.3
-0.2
-0.6
-0.5
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
+0.1
+0.2
-0.1
-1.4
+0.5
nitrogen source
H2 N-free with 10mM Cytidine
+0.7
+0.0
-0.1
-0.9
-0.5
stress
McCas_H2_complete Ticarcillin 50 mM
+0.6
-0.5
-0.8
-0.3
+0.1
stress
McCas_H2_complete metavanadate 4.54545454545455 mM
+0.7
+0.1
-0.1
-0.7
-0.8
stress
Formate 100 mM hypophosphite
+0.3
+0.1
+0.2
-2.2
+0.9
nitrogen source
H2 N-free with 5mM Inosine
+1.5
-0.3
-0.4
-0.6
-0.1
stress
McCas_H2_complete 1,2-dimethyl-5-nitroimidazole 0.00833333333333333 mM
+1.0
-0.4
-0.4
-0.4
+0.5
stress
McCas_H2_complete Hydroxylamine 2.08333333333333 mM
+1.0
-0.3
-0.1
-0.8
+0.5
stress
McCas_H2_complete Fluorophosphate 62.5 mM
+1.5
-0.2
-0.2
-0.5
+0.0
stress
McCas_H2_complete Cesium chloride 41.6666666666667 mM
+1.0
-0.2
+0.2
-0.6
+0.2
stress
McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM
+1.4
-0.1
-0.4
+0.1
-0.2
stress
McCas_formate_complete hypophosphite 125 mM
+1.3
-0.3
+0.3
-0.2
-0.3
stress
McCas_H2_complete 3-nitroxypropanol 0.00833333333333333 mM
+0.8
-0.4
+0.2
-0.3
+0.5
stress
McCas_H2_complete sodium nitrite 1.04166666666667 mM
+0.7
-0.2
+0.5
-0.3
+0.5
stress
McCas_H2_complete metronidazole 0.000833333333333333
+1.0
-0.3
+0.2
-0.5
+0.7
stress
McCas_H2_complete sulfate 125 mM
+0.7
-0.2
+1.1
-0.4
+0.2
stress
McCas_H2_complete Nitrofurantoin 0.1 mM
+1.0
-0.3
+0.4
+0.3
+0.2
stress
McCas_H2_complete 3-nitroxypropanol 0.00833333333333333 mM
+1.5
-0.1
+0.6
-0.0
+0.3
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