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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS03705 and MMP_RS03710 are separated by 157 nucleotides
MMP_RS03710 and MMP_RS03715 are separated by 216 nucleotides
MMP_RS03715 and MMP_RS03720 are separated by 156 nucleotides
MMP_RS03720 and MMP_RS03725 are separated by 9 nucleotides
MMP_RS03705: MMP_RS03705 - (5-formylfuran-3-yl)methyl phosphate synthase, at 699,229 to 699,939
_RS03705
MMP_RS03710: MMP_RS03710 - tRNA-Arg, at 700,097 to 700,170
_RS03710
MMP_RS03715: MMP_RS03715 - class III signal peptide-containing protein, at 700,387 to 700,983
_RS03715
MMP_RS03720: MMP_RS03720 - cation-transporting P-type ATPase, at 701,140 to 703,920
_RS03720
MMP_RS03725: MMP_RS03725 - magnesium/cobalt transporter CorA, at 703,930 to 704,988
_RS03725
Group
Condition
MMP
_RS03705
MMP
_RS03710
MMP
_RS03715
MMP
_RS03720
MMP
_RS03725
nutrient t2
H2 deepwell autotrophic conditions
N.D.
N.D.
-0.5
-0.4
-0.1
nutrient t2
H2 deepwell acetate and casamino FREE
N.D.
N.D.
-0.5
-0.5
-0.1
nutrient t2
H2 deepwell casamino FREE
N.D.
N.D.
-0.6
-0.2
-0.2
nutrient t2
H2 deepwell acetate and casamino FREE
N.D.
N.D.
-0.4
-0.2
-0.3
nutrient t2
H2 deepwell autotrophic conditions
N.D.
N.D.
-0.5
-0.4
-0.0
nitrogen source
H2 N-free with 10mM L-Methionine
N.D.
N.D.
-0.3
-0.3
-0.4
nutrient t2
H2 deepwell vitamin and casamino FREE
N.D.
N.D.
-0.5
-0.2
-0.2
nutrient t2
H2 deepwell autotrophic conditions
N.D.
N.D.
-0.6
-0.3
+0.1
nitrogen source
N2 fixation, H2 media
N.D.
N.D.
-0.3
-0.4
-0.2
no stress control
McCas_H2_complete no stress control
N.D.
N.D.
-0.2
-0.3
-0.3
nutrient t2
H2 deepwell acetate and casamino FREE
N.D.
N.D.
-0.3
-0.4
-0.1
nutrient t2
H2 deepwell autotrophic conditions
N.D.
N.D.
-0.6
-0.1
+0.0
stress
McCas_H2_complete Cadmium chloride hemipentahydrate 0.555555555555556 mM
N.D.
N.D.
-0.4
-0.4
+0.2
stress
Formate with Bacitracin 15.6 uM
N.D.
N.D.
-0.3
+0.2
-0.5
stress
McCas_formate_complete nitrate 35.7142857142857 mM
N.D.
N.D.
-0.4
+0.2
-0.2
stress
McCas_H2_complete 5-Fluorouracil 0.00833333333333333 mM
N.D.
N.D.
+0.3
-0.2
-0.4
stress
McCas_H2_complete Zinc Pyrithione 0.0142857142857143 mM
N.D.
N.D.
+0.3
-0.1
-0.3
stress
McCas_formate_complete sodium nitrite 0.416666666666667 mM
N.D.
N.D.
-0.3
+0.5
-0.2
nutrient t2
H2 deepwell acetate and vitamin FREE
N.D.
N.D.
-0.1
-0.3
+0.5
stress
H2 50 mM hypophosphite
N.D.
N.D.
-0.2
-0.3
+0.5
stress
McCas_formate_complete Lithium chloride 125 mM
N.D.
N.D.
-0.4
+0.4
+0.1
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
N.D.
N.D.
+0.4
+0.2
-0.2
stress
McCas_H2_complete Chloride 250 mM
N.D.
N.D.
+0.3
-0.2
+0.4
stress
McCas_formate_complete dimetridazole 0.00416666666666667 mM
N.D.
N.D.
+0.8
-0.0
-0.2
stress
McCas_H2_complete Sulfaquinoxaline 0.1 mM
N.D.
N.D.
+0.4
-0.1
+0.3
stress
McCas_H2_complete metronidazole 0.000833333333333333
N.D.
N.D.
+0.8
-0.1
-0.1
stress
McCas_H2_complete Chloride 250 mM
N.D.
N.D.
+0.3
-0.1
+0.4
stress
McCas_H2_complete Econazole nitrate salt 0.02 mM
N.D.
N.D.
+0.4
+0.1
+0.3
stress
McCas_formate_complete rubidium chloride 62.5 mM
N.D.
N.D.
-0.0
+0.4
+0.5
stress
Formate with Neomycin 12.5 mM
N.D.
N.D.
+0.8
+0.1
+0.1
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