Fitness for 5 genes in Methanococcus maripaludis S2

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	MMP_RS03680	MMP_RS03685	MMP_RS03690	MMP_RS03695	MMP_RS03700
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations	+0.1	-4.7	N.D.	N.D.	-5.7
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations	-0.1	-1.9	N.D.	N.D.	-7.6
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations	-0.1	-2.2	N.D.	N.D.	-7.1
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations	+0.6	-1.9	N.D.	N.D.	-7.7
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations	-0.1	-1.9	N.D.	N.D.	-6.4
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations	+0.2	-1.0	N.D.	N.D.	-7.6
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations	+0.6	-1.5	N.D.	N.D.	-7.1
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 10 generations	-0.0	-0.5	N.D.	N.D.	-7.0
nutrient t2	H2 deepwell casamino FREE	-0.4	-0.6	N.D.	N.D.	-6.7
nutrient t2	H2 deepwell casamino FREE	-0.2	-0.4	N.D.	N.D.	-6.7
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations	-0.1	-0.5	N.D.	N.D.	-6.4
nutrient t2	H2 deepwell vitamin and casamino FREE	-0.0	-0.6	N.D.	N.D.	-6.0
nutrient t2	H2 deepwell acetate and vitamin FREE	-0.5	-0.3	N.D.	N.D.	-5.8
nutrient t2	H2 deepwell vitamin and casamino FREE	-0.2	-0.3	N.D.	N.D.	-6.1
nutrient t2	H2 deepwell acetate FREE	-0.5	-0.6	N.D.	N.D.	-5.3
nutrient t2	H2 deepwell casamino FREE	+0.1	-0.5	N.D.	N.D.	-6.0
rich t2	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE	+0.0	-0.2	N.D.	N.D.	-6.1
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 10 generations	+0.2	-0.6	N.D.	N.D.	-5.9
nutrient t2	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE	+0.1	-0.4	N.D.	N.D.	-6.0
mixed community	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations	+0.1	-1.3	N.D.	N.D.	-5.1
stress	Formate 100 mM hypophosphite	-0.6	-2.6	N.D.	N.D.	-3.0
nutrient t2	H2 deepwell acetate FREE	-0.1	-0.2	N.D.	N.D.	-5.8
nutrient t2	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE	+0.1	+0.1	N.D.	N.D.	-6.1
rich t2	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE	+0.3	-0.3	N.D.	N.D.	-5.8
stress	McCas_formate_complete Rifampicin 0.5 mM	-0.9	+0.7	N.D.	N.D.	-4.8
stress	Formate with Neomycin 12.5 mM	+0.2	-0.1	N.D.	N.D.	+6.1
natural competence	H2 McCas- cells grown in liquid medium with neomycin	-0.1	+0.3	N.D.	N.D.	+6.3
natural competence	H2 McCas- cells grown in liquid medium with neomycin	-0.2	+0.3	N.D.	N.D.	+7.3
natural competence	H2 McCas- cells grown in liquid medium with neomycin	+0.0	+0.3	N.D.	N.D.	+7.3
natural competence	H2 McCas- cells incubated with 5000 ng DNA (pDNA pLW40neo) then transferred and grown in liquid medium with neomycin	-0.0	+0.4	N.D.	N.D.	+7.7