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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS03535 and MMP_RS03540 are separated by 10 nucleotides
MMP_RS03540 and MMP_RS03545 are separated by 136 nucleotides
MMP_RS03545 and MMP_RS03550 are separated by 95 nucleotides
MMP_RS03550 and MMP_RS03555 are separated by 122 nucleotides
MMP_RS03535: MMP_RS03535 - helix-turn-helix transcriptional regulator, at 662,813 to 663,016
_RS03535
MMP_RS03540: MMP_RS03540 - DUF2178 domain-containing protein, at 663,027 to 663,413
_RS03540
MMP_RS03545: MMP_RS03545 - ATP-binding protein, at 663,550 to 664,947
_RS03545
MMP_RS03550: MMP_RS03550 - DUF2124 domain-containing protein, at 665,043 to 665,519
_RS03550
MMP_RS03555: MMP_RS03555 - transcriptional regulator, at 665,642 to 666,622
_RS03555
Group
Condition
MMP
_RS03535
MMP
_RS03540
MMP
_RS03545
MMP
_RS03550
MMP
_RS03555
stress
McCas_formate_complete Chloride 250 mM
-0.2
-0.1
-0.1
-6.2
-1.8
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
-1.9
-0.9
-0.1
-3.5
-2.0
stress
McCas_formate_complete Rifampicin 0.5 mM
-3.4
-0.5
-0.1
-0.6
-3.0
stress
McCas_formate_complete Rifampicin 0.5 mM
-2.4
-0.4
-0.3
-0.6
-2.2
stress
McCas_formate_complete sulfate 125 mM
-0.8
-0.3
+0.2
-1.8
-2.4
nitrogen source
H2 N-free with 10mM Uridine
-1.5
-0.9
-0.3
-1.4
-0.7
stress
McCas_formate_complete Cesium chloride 41.6666666666667 mM
-0.9
-0.3
-0.2
-1.9
-1.4
nitrogen source
H2 N-free with 10mM L-Glutamic
-1.3
-0.3
-0.4
-0.3
-2.2
stress
McCas_formate_complete Novobiocin 0.025 mM
-1.2
-0.5
-0.0
-1.2
-1.6
nitrogen source
H2 N-free with 10mM L-Glutamic
-1.3
-0.2
-0.4
-0.8
-1.8
nitrogen source
H2 N-free with 10mM L-tyrosine
-1.2
-1.2
-0.3
-0.8
-0.9
nutrient t2
H2 deepwell acetate FREE
-0.7
-0.0
-0.5
-1.7
-1.4
stress
McCas_formate_complete Antimycin A 0.01 mM
-0.1
-0.4
-0.5
-1.3
-2.0
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
-0.6
-0.7
+0.2
-1.0
-2.1
nitrogen source
H2 N-free with 10mM Uridine
-1.2
-0.5
-0.2
-1.8
-0.4
nitrogen source
H2 N-free with 10mM NAG
-2.1
-1.0
+0.1
-0.4
-0.7
stress
McCas_formate_complete sodium nitrite 0.416666666666667 mM
-0.8
-0.6
+0.0
-0.8
-1.9
stress
McCas_formate_complete Polymyxin B sulfate 0.1 mM
+0.0
-0.2
-0.1
-2.0
-1.7
nitrogen source
H2 N-free with 10mM Thymidine
-1.5
+0.3
-0.3
-1.6
-0.6
stress
McCas_formate_complete Calcium Chloride Dihydrate 166.666666666667 mM
+0.4
+0.2
+0.1
-1.3
-2.2
stress
McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
-0.6
+0.8
+0.1
-0.6
-2.1
stress
Formate 100 mM hypophosphite
+1.5
-0.4
+0.1
-0.2
-1.9
nitrogen source
H2 N-free with 10mM L-Alanine
-1.1
+0.6
+0.3
+1.6
-0.9
stress
McCas_formate_complete dimetridazole 0.00416666666666667 mM
-0.5
-0.4
+0.4
+3.0
-1.4
nutrient t2
H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
+1.7
+0.3
+0.4
+1.6
-1.1
natural competence
H2 McCas- cells grown in liquid medium with neomycin
+3.2
+2.1
+0.0
+0.1
-0.0
stress
Formate with Neomycin 12.5 mM
+5.4
+3.6
+0.1
+0.1
+0.4
natural competence
H2 McCas- cells grown in liquid medium with neomycin
+6.1
+3.9
-0.1
+0.3
+0.2
natural competence
H2 McCas- cells grown in liquid medium with neomycin
+6.7
+4.2
+0.0
+0.2
-0.3
natural competence
H2 McCas- cells incubated with 5000 ng DNA (pDNA pLW40neo) then transferred and grown in liquid medium with neomycin
+6.9
+4.2
+0.0
+0.7
+0.3
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