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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS03515 and MMP_RS03520 are separated by 9 nucleotides
MMP_RS03520 and MMP_RS03525 are separated by 102 nucleotides
MMP_RS03525 and MMP_RS03530 are separated by 15 nucleotides
MMP_RS03530 and MMP_RS03535 are separated by 241 nucleotides
MMP_RS03515: MMP_RS03515 - DMT family transporter, at 659,209 to 660,099
_RS03515
MMP_RS03520: MMP_RS03520 - YwbE family protein, at 660,109 to 660,303
_RS03520
MMP_RS03525: MMP_RS03525 - ketopantoate reductase family protein, at 660,406 to 661,326
_RS03525
MMP_RS03530: MMP_RS03530 - tetratricopeptide repeat protein, at 661,342 to 662,571
_RS03530
MMP_RS03535: MMP_RS03535 - helix-turn-helix transcriptional regulator, at 662,813 to 663,016
_RS03535
Group
Condition
MMP
_RS03515
MMP
_RS03520
MMP
_RS03525
MMP
_RS03530
MMP
_RS03535
stress
McCas_formate_complete Rifampicin 0.5 mM
-0.0
-0.8
-0.2
-0.2
-3.4
nitrogen source
H2 N-free with 10mM L-Methionine
+0.0
-0.6
-0.9
-0.3
-2.1
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
-0.0
-1.3
-0.1
-0.2
-1.9
nutrient t2
H2 deepwell acetate FREE
-0.3
-1.4
+0.0
-0.2
-1.7
nitrogen source
H2 N-free with 10mM Putrescine
-0.1
-1.2
-0.2
-0.1
-1.8
stress
McCas_H2_complete Zinc Pyrithione 0.0142857142857143 mM
-0.0
-0.9
-0.2
-0.2
-1.9
nitrogen source
H2 N-free with 2mM Adenine
-0.1
-0.9
-0.1
-0.3
-1.7
nitrogen source
H2 N-free with 10mM Uridine
-0.2
-0.9
-0.3
-0.3
-1.5
nitrogen source
H2 N-free with 10mM NAG
-0.2
-1.1
-0.1
-0.3
-1.3
stress
McCas_formate_complete Novobiocin 0.025 mM
-0.4
-1.8
-0.2
-0.4
-0.2
nitrogen source
H2 N-free with 10mM NAG
-0.3
-0.3
+0.1
-0.3
-2.1
nitrogen source
H2 N-free with 10mM L-Ornithine
-0.1
-1.0
-0.3
-0.4
-1.0
nitrogen source
H2 N-free with 10mM L-Methionine
+0.0
-0.5
-0.9
-0.1
-1.5
stress
McCas_formate_complete Rifampicin 0.5 mM
-0.2
+0.1
-0.3
-0.1
-2.4
stress
McCas_H2_complete Chlorpromazine 0.0333333333333333 mM
-0.4
-1.0
-0.3
-0.3
-0.7
nitrogen source
H2 N-free with 10mM Cytidine
-0.1
-1.6
-0.1
-0.1
-0.9
nitrogen source
H2 N-free with 2.5mM Cytosine
-0.1
-1.3
-0.2
-0.2
-1.1
nitrogen source
H2 N-free with 10mM L-Isoleucine
-0.1
-0.6
-0.3
-0.3
-1.4
nitrogen source
H2 N-free with 10mM Uridine
-0.2
-0.7
-0.0
-0.5
-1.2
stress
McCas_H2_complete Antimycin A 0.01 mM
-0.1
+0.8
-0.1
-0.1
-1.8
stress
McCas_H2_complete 2-bromoethanesulfonic 0.00833333333333333 mM
+0.4
-1.9
+0.1
+0.2
+0.2
stress
McCas_H2_complete Bacitracin 0.003125 mM
+0.1
+1.7
-0.0
-0.3
-0.8
stress
McCas_H2_complete dimetridazole 0.00833333333333333 mM
+0.1
+2.4
-0.1
+0.1
-0.0
natural competence
H2 McCas- cells grown in liquid medium with neomycin
+0.0
-0.3
+0.1
-0.2
+3.2
stress
McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM
+0.0
+1.0
+0.1
-0.1
+1.9
nutrient t2
H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
+0.1
-0.0
+0.6
+0.8
+1.7
natural competence
H2 McCas- cells grown in liquid medium with neomycin
-0.1
-1.1
+0.1
+0.3
+6.1
stress
Formate with Neomycin 12.5 mM
+0.1
+0.2
+0.2
+0.1
+5.4
natural competence
H2 McCas- cells grown in liquid medium with neomycin
-0.0
-0.6
+0.2
-0.2
+6.7
natural competence
H2 McCas- cells incubated with 5000 ng DNA (pDNA pLW40neo) then transferred and grown in liquid medium with neomycin
+0.0
-0.2
-0.1
+0.0
+6.9
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