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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS03420 and MMP_RS03425 are separated by 506 nucleotides
MMP_RS03425 and MMP_RS03430 are separated by 21 nucleotides
MMP_RS03430 and MMP_RS03435 are separated by 119 nucleotides
MMP_RS03435 and MMP_RS03440 are separated by 57 nucleotides
MMP_RS03420: MMP_RS03420 - acetolactate synthase small subunit, at 643,154 to 643,663
_RS03420
MMP_RS03425: MMP_RS03425 - hypothetical protein, at 644,170 to 644,622
_RS03425
MMP_RS03430: MMP_RS03430 - bile acid:sodium symporter family protein, at 644,644 to 645,609
_RS03430
MMP_RS03435: MMP_RS03435 - ketol-acid reductoisomerase, at 645,729 to 646,721
_RS03435
MMP_RS03440: MMP_RS03440 - MoaD/ThiS family protein, at 646,779 to 646,973
_RS03440
Group
Condition
MMP
_RS03420
MMP
_RS03425
MMP
_RS03430
MMP
_RS03435
MMP
_RS03440
nutrient t2
Formate deepwell autotrophic conditions
-3.2
-0.2
-0.7
-6.4
-0.1
nutrient t2
H2 deepwell acetate and casamino FREE
-3.2
-0.1
-0.3
-5.9
-1.0
nutrient t2
Formate deepwell autotrophic conditions
-3.2
-0.0
-0.7
-6.4
+0.0
nutrient t2
Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
-2.6
-0.1
-0.2
-6.7
-0.6
nutrient t2
Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
-2.8
-0.1
-0.3
-6.7
-0.4
nutrient t2
Formate deepwell acetate and casamino FREE
-3.2
-0.1
-0.4
-6.4
-0.1
nutrient t2
H2 deepwell autotrophic conditions
-2.9
-0.3
-0.1
-6.1
-0.7
nutrient t2
Formate deepwell acetate and casamino FREE
-3.7
-0.0
-0.3
-5.7
-0.2
nutrient t1
Formate deepwell casamino FREE
-3.1
-0.0
-0.3
-6.4
+0.1
rich t2
H2 McCas deepwell complete
-0.3
-0.3
-0.3
-4.2
-4.5
nutrient t2
H2 deepwell autotrophic conditions
-2.9
-0.2
-0.4
-6.1
-0.1
nutrient t2
H2 deepwell vitamin and casamino FREE
-2.0
+0.0
-0.3
-5.9
-1.5
nutrient t2
H2 deepwell autotrophic conditions
-2.9
-0.2
+0.0
-5.7
-0.7
nutrient t1
Formate deepwell casamino FREE
-3.0
-0.1
-0.2
-5.6
-0.5
nutrient t2
H2 deepwell acetate and casamino FREE
-2.9
+0.0
-0.1
-6.2
-0.2
nutrient t2
H2 deepwell acetate and casamino FREE
-2.3
-0.2
-0.2
-6.1
-0.5
nutrient t2
Formate deepwell vitamin and casamino FREE
-2.8
+0.0
-0.3
-6.2
+0.5
nutrient t2
Formate deepwell autotrophic conditions
-3.3
-0.1
-0.6
-5.0
+0.3
nitrogen source
H2 N-free with 10mM L-Leucine
-2.2
-0.1
+0.3
-4.2
-2.6
nitrogen source
H2 N-free with 2mM Thymine
-2.1
-0.0
+0.3
-6.0
-0.8
nitrogen source
H2 N-free with 10mM L-Valine
-2.8
+0.2
+0.6
-4.4
-2.2
nutrient t2
H2 deepwell acetate FREE
-0.9
+0.4
-0.1
-6.3
-1.9
nutrient t2
Formate deepwell vitamin and casamino FREE
-3.1
-0.1
-0.4
-5.3
+0.5
nutrient t2
H2 deepwell acetate and casamino FREE
-2.6
-0.1
+0.0
-5.9
+0.6
nitrogen source
H2 N-free with 10mM L-Valine
-1.6
+0.2
+0.4
-5.4
-1.5
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
+1.4
-0.1
+0.2
-6.4
-2.1
stress
McCas_H2_complete Spiramycin 0.1 mM
-0.2
-0.6
+0.4
-6.3
+1.8
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
+2.5
-0.2
+0.4
-5.8
-1.1
stress
McCas_H2_complete Calcium Chloride Dihydrate 83.3333333333333 mM
+2.3
+0.3
-0.1
-6.5
-0.0
stress
McCas_H2_complete Chloride 250 mM
+0.0
-0.3
+0.1
-6.3
+3.1
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