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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS03335 and MMP_RS03340 are separated by 2 nucleotides
MMP_RS03340 and MMP_RS03345 are separated by 213 nucleotides
MMP_RS03345 and MMP_RS03350 are separated by 39 nucleotides
MMP_RS03350 and MMP_RS03355 are separated by 108 nucleotides
MMP_RS03335: MMP_RS03335 - ABC transporter permease, at 626,477 to 627,670
_RS03335
MMP_RS03340: MMP_RS03340 - ABC transporter ATP-binding protein, at 627,673 to 628,398
_RS03340
MMP_RS03345: MMP_RS03345 - hypothetical protein, at 628,612 to 629,844
_RS03345
MMP_RS03350: MMP_RS03350 - winged helix-turn-helix domain-containing protein, at 629,884 to 630,426
_RS03350
MMP_RS03355: MMP_RS03355 - beta-propeller domain-containing protein, at 630,535 to 632,772
_RS03355
Group
Condition
MMP
_RS03335
MMP
_RS03340
MMP
_RS03345
MMP
_RS03350
MMP
_RS03355
stress
McCas_formate_complete sulfate 125 mM
-0.2
-3.2
-0.0
-0.8
-0.3
stress
McCas_formate_complete sodium nitrite 0.416666666666667 mM
+0.4
-3.2
+0.2
-1.2
-0.0
stress
Formate with sodium chlorite 3.125 mM
+0.1
-3.5
-0.2
-0.1
+0.0
stress
McCas_formate_complete Chloride 250 mM
+0.1
-3.3
+0.3
-0.5
+0.1
nitrogen source
H2 N-free with 10mM NAG
+0.4
-3.2
+0.0
-0.3
-0.1
stress
McCas_formate_complete metavanadate 4.54545454545455 mM
-0.5
-2.5
+0.2
-0.3
+0.1
stress
McCas_H2_complete Bacitracin 0.003125 mM
-0.8
-0.7
-0.9
-0.5
+0.2
stress
McCas_H2_complete Bacitracin 0.003125 mM
-0.7
+0.6
-1.1
-1.5
+0.0
stress
Formate with Bacitracin 15.6 uM
-0.6
-0.0
-1.6
-0.7
+0.3
nitrogen source
H2 N-free with 10mM L-Serine
-0.3
-2.2
-0.3
-0.0
+0.3
stress
Formate with Bacitracin 15.6 uM
-0.5
+0.8
-1.3
+0.5
-0.2
stress
McCas_formate_complete Econazole nitrate salt 0.02 mM
+0.3
+1.1
+0.1
-1.5
-0.1
nutrient t2
Formate deepwell acetate FREE
-0.2
+1.6
+0.0
-1.4
-0.0
nitrogen source
H2 N-free with 10mM L-Methionine
-0.3
+1.4
+0.3
-0.6
-0.5
nitrogen source
H2 N-free with 10mM L-Methionine
-0.1
+1.5
+0.2
-0.7
-0.4
nutrient t2
H2 deepwell acetate and vitamin FREE
-0.4
+1.3
+0.5
-0.6
-0.2
stress
McCas_H2_complete 2-bromoethanesulfonic 0.00833333333333333 mM
-0.6
+1.9
+0.3
-0.7
-0.1
stress
McCas_H2_complete Zinc Pyrithione 0.0142857142857143 mM
-0.3
+2.0
+0.1
-0.5
-0.2
stress
McCas_H2_complete sulfate 125 mM
+0.2
+1.5
+0.5
-0.6
-0.5
nitrogen source
N2 fixation, H2 media
-0.1
+2.2
-0.1
-0.7
-0.3
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
-0.2
+2.8
-0.3
-0.6
-0.3
nitrogen source
H2 N-free with 10mM L-Methionine
+0.3
+2.1
+0.3
-0.6
-0.4
nitrogen source
H2 N-free with 5mM Inosine
+0.2
+2.2
+0.2
-0.7
-0.2
stress
McCas_formate_complete hypophosphite 125 mM
-0.1
+1.9
+0.1
-0.6
+0.3
stress
McCas_H2_complete 2,2-dibromo-2-cyanoacetamide 0.0333333333333333 mM
-0.1
+2.3
+0.3
-0.6
-0.2
nitrogen source
H2 N-free with 10mM Glycine
+0.3
+2.7
-0.0
-0.8
-0.2
nitrogen source
H2 N-free with 10mM L-Alanine
-0.2
+2.6
+0.2
-0.2
-0.1
nitrogen source
N2 fixation, H2 media
+0.3
+2.7
+0.2
-0.4
-0.0
stress
McCas_H2_complete Rifampicin 0.5 mM
+0.4
+2.0
+0.0
+1.0
-0.2
stress
McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
+1.0
+2.4
+0.2
+0.6
+0.4
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