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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS03320 and MMP_RS03325 are separated by 180 nucleotides
MMP_RS03325 and MMP_RS03330 are separated by 131 nucleotides
MMP_RS03330 and MMP_RS03335 are separated by 153 nucleotides
MMP_RS03335 and MMP_RS03340 are separated by 2 nucleotides
MMP_RS03320: MMP_RS03320 - metal-dependent transcriptional regulator, at 623,850 to 624,254
_RS03320
MMP_RS03325: MMP_RS03325 - hypothetical protein, at 624,435 to 625,601
_RS03325
MMP_RS03330: MMP_RS03330 - rubrerythrin family protein, at 625,733 to 626,323
_RS03330
MMP_RS03335: MMP_RS03335 - ABC transporter permease, at 626,477 to 627,670
_RS03335
MMP_RS03340: MMP_RS03340 - ABC transporter ATP-binding protein, at 627,673 to 628,398
_RS03340
Group
Condition
MMP
_RS03320
MMP
_RS03325
MMP
_RS03330
MMP
_RS03335
MMP
_RS03340
stress
McCas_formate_complete Chloride 250 mM
+0.3
-0.1
-0.7
+0.1
-3.3
stress
Formate with sodium chlorite 3.125 mM
+0.3
-0.3
-0.0
+0.1
-3.5
stress
McCas_formate_complete sulfate 125 mM
+0.7
-0.1
-0.5
-0.2
-3.2
nitrogen source
H2 N-free with 10mM NAG
-0.6
-0.1
+0.2
+0.4
-3.2
stress
McCas_formate_complete metavanadate 4.54545454545455 mM
+0.4
-0.1
-0.5
-0.5
-2.5
nitrogen source
H2 N-free with 10mM L-tyrosine
-1.5
-0.4
+0.1
+0.8
-1.3
stress
McCas_formate_complete sodium nitrite 0.416666666666667 mM
+1.5
-0.4
-0.3
+0.4
-3.2
stress
McCas_formate_complete Rifampicin 0.5 mM
+1.2
-0.1
-0.9
-0.4
-1.4
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
+0.7
-0.2
-1.1
+0.6
-1.5
nitrogen source
H2 N-free with 10mM L-Serine
+1.0
+0.1
-0.3
-0.2
-2.0
natural competence
H2 McCas- cells grown in liquid medium with neomycin
+0.7
+0.3
+0.2
+0.2
-2.2
stress
McCas_formate_complete sulfate 125 mM
+2.3
-0.3
-0.8
+0.1
-1.4
stress
McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
+1.2
-1.4
-0.8
+0.8
+0.8
stress
McCas_formate_complete arsenate 0.416666666666667 mM
+2.2
-0.4
+0.0
+0.1
-1.1
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations
+1.7
-0.3
-0.1
-1.1
+0.9
stress
McCas_H2_complete 2-bromoethanesulfonic 0.00833333333333333 mM
-0.7
+0.3
+0.2
-0.6
+1.9
stress
McCas_formate_complete arsenate 0.416666666666667 mM
+1.9
+0.3
-0.5
+0.4
-0.6
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
+2.7
-0.2
-0.1
-0.1
-0.6
stress
McCas_H2_complete dimetridazole 0.00833333333333333 mM
+3.8
-0.3
+0.1
-0.5
-0.4
stress
McCas_formate_complete Fluorophosphate 62.5 mM
+1.8
-0.3
-0.4
+0.5
+1.2
stress
McCas_formate_complete Chloride 250 mM
+1.6
-0.1
-0.5
+0.6
+1.3
stress
McCas_formate_complete hypophosphite 125 mM
+1.5
+0.2
-0.4
-0.1
+1.9
stress
McCas_H2_complete Zinc Pyrithione 0.0142857142857143 mM
+1.4
+0.1
-0.0
-0.3
+2.0
stress
McCas_formate_complete Chloride 500 mM
+2.1
-0.3
+0.1
+0.3
+1.2
stress
McCas_formate_complete Econazole nitrate salt 0.02 mM
+2.8
-0.5
-0.1
+0.3
+1.1
nitrogen source
H2 N-free with 5mM Inosine
+1.3
+0.3
-0.3
+0.2
+2.2
stress
McCas_formate_complete 5-Fluorouracil 4.16666666666667E-05 mM
+0.6
+0.3
-0.4
+1.0
+2.4
stress
McCas_H2_complete Rifampicin 0.5 mM
+1.9
-0.0
-0.1
+0.4
+2.0
stress
McCas_H2_complete Hydroxylamine 1.04166666666667 mM
+2.8
-0.0
+0.2
-0.3
+1.5
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
+2.1
-0.0
-0.1
-0.2
+2.8
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