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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS03245 and MMP_RS03250 are separated by 105 nucleotides
MMP_RS03250 and MMP_RS03255 are separated by 10 nucleotides
MMP_RS03255 and MMP_RS03260 are separated by 22 nucleotides
MMP_RS03260 and MMP_RS03265 are separated by 19 nucleotides
MMP_RS03245: MMP_RS03245 - DNA repair and recombination protein RadB, at 612,707 to 613,357
_RS03245
MMP_RS03250: MMP_RS03250 - MJ1244 family protein, at 613,463 to 613,792
_RS03250
MMP_RS03255: MMP_RS03255 - DUF134 domain-containing protein, at 613,803 to 614,198
_RS03255
MMP_RS03260: MMP_RS03260 - methyl coenzyme M reductase system component A2, at 614,221 to 615,816
_RS03260
MMP_RS03265: MMP_RS03265 - sugar phosphate isomerase/epimerase, at 615,836 to 616,645
_RS03265
Group
Condition
MMP
_RS03245
MMP
_RS03250
MMP
_RS03255
MMP
_RS03260
MMP
_RS03265
stress
Formate with hypochlorite 5 mM
-0.1
-6.3
N.D.
N.D.
+0.0
stress
Formate with nitrate 62.5 mM
-0.6
-3.8
N.D.
N.D.
-0.2
stress
McCas_H2_complete Phenazine methosulfate 0.0333333333333333 mM
-0.6
-4.0
N.D.
N.D.
-0.0
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
-0.5
-3.7
N.D.
N.D.
-0.1
stress
McCas_H2_complete 2-bromoethanesulfonic 0.00833333333333333 mM
+0.3
-4.3
N.D.
N.D.
-0.3
stress
Formate with hypochlorite 5 mM
-0.2
-4.2
N.D.
N.D.
+0.1
nutrient t2
H2 deepwell casamino FREE
-1.0
-3.3
N.D.
N.D.
+0.0
stress
McCas_H2_complete Nitrofurantoin 0.1 mM
-0.3
-3.9
N.D.
N.D.
-0.1
stress
McCas_H2_complete Phenazine ethosulfate 0.1 mM
-0.6
-3.4
N.D.
N.D.
-0.1
stress
McCas_H2_complete Phenazine methosulfate 0.0333333333333333 mM
-1.2
-2.8
N.D.
N.D.
-0.1
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
-0.0
-3.7
N.D.
N.D.
-0.3
stress
McCas_H2_complete Anhydrotetracycline 0.05 mM
-1.3
-2.7
N.D.
N.D.
+0.0
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations
-0.6
-3.2
N.D.
N.D.
-0.1
stress
Formate with nitrate 62.5 mM
-0.6
-2.9
N.D.
N.D.
-0.3
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
-0.0
-3.7
N.D.
N.D.
-0.1
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations
-0.5
-3.2
N.D.
N.D.
-0.1
stress
McCas_H2_complete Phenazine ethosulfate 0.1 mM
-0.4
-3.3
N.D.
N.D.
+0.0
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
-0.8
-2.6
N.D.
N.D.
-0.2
stress
McCas_H2_complete metronidazole 0.00833333333333333 mM
-2.1
-1.1
N.D.
N.D.
-0.0
stress
McCas_H2_complete 3-nitroxypropanol 0.00833333333333333 mM
-0.7
-2.7
N.D.
N.D.
+0.1
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
-1.0
-1.9
N.D.
N.D.
-0.3
stress
McCas_H2_complete nitrate 35.7142857142857 mM
-0.0
-3.1
N.D.
N.D.
-0.0
stress
Formate with Nitrofurantoin 0.25 mM
+0.5
-2.6
N.D.
N.D.
-0.4
stress
McCas_H2_complete Chlorate 250 mM
+1.1
-2.0
N.D.
N.D.
-0.2
nitrogen source
H2 N-free with 10mM Uridine
-1.8
+1.4
N.D.
N.D.
-0.1
stress
McCas_H2_complete 3-nitroxypropanol 0.00833333333333333 mM
+1.9
-2.5
N.D.
N.D.
+0.3
nitrogen source
H2 N-free with 10mM Uridine
-1.3
+1.7
N.D.
N.D.
-0.1
nitrogen source
H2 N-free with 10mM L-tyrosine
-0.8
+2.5
N.D.
N.D.
-0.2
nitrogen source
H2 N-free with 10mM L-tyrosine
-0.2
+3.1
N.D.
N.D.
-0.2
stress
McCas_formate_complete Lithium chloride 125 mM
+0.1
+3.1
N.D.
N.D.
-0.3
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