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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS02755 and MMP_RS02760 are separated by 12 nucleotides
MMP_RS02760 and MMP_RS02765 are separated by 4 nucleotides
MMP_RS02765 and MMP_RS02770 are separated by 194 nucleotides
MMP_RS02770 and MMP_RS02775 are separated by 40 nucleotides
MMP_RS02755: MMP_RS02755 - ABC transporter permease, at 526,565 to 527,812
_RS02755
MMP_RS02760: MMP_RS02760 - COG1361 S-layer family protein, at 527,825 to 529,141
_RS02760
MMP_RS02765: MMP_RS02765 - ABC transporter ATP-binding protein, at 529,146 to 529,850
_RS02765
MMP_RS02770: MMP_RS02770 - hypothetical protein, at 530,045 to 530,620
_RS02770
MMP_RS02775: MMP_RS02775 - hypothetical protein, at 530,661 to 531,122
_RS02775
Group
Condition
MMP
_RS02755
MMP
_RS02760
MMP
_RS02765
MMP
_RS02770
MMP
_RS02775
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations
-0.3
-0.3
-0.1
-0.9
-1.2
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
-0.5
-0.6
-0.6
+0.3
-0.8
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations
-0.5
-0.1
-0.6
-0.7
-0.1
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
-0.4
-0.2
+0.1
-0.6
-0.8
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 10 generations
-0.2
-0.2
-0.1
-0.6
-0.8
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 10 generations
-0.4
-0.3
-0.6
+0.4
-0.5
no stress control
McCas_H2_complete no stress control
+0.1
-0.2
-1.0
+0.1
-0.4
stress
McCas_H2_complete metronidazole 0.000833333333333333
-0.5
+0.2
-0.8
-0.4
+0.2
no stress control
McCas_H2_complete no stress control
-0.2
+0.0
-1.1
+0.6
-0.3
stress
McCas_H2_complete Benzethonium chloride 0.003125 mM
-0.4
-0.0
-1.0
+0.2
+0.2
nitrogen source
H2 N-free with 10mM L-Methionine
-0.3
+0.0
-0.6
+0.3
-0.3
stress
McCas_formate_complete gold (III) chloride 0.0714285714285714 mM
+0.4
-0.3
-0.7
-0.2
+0.0
stress
McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM
-0.2
+0.1
-1.0
+0.3
+0.0
stress
McCas_H2_complete 2,2-dibromo-2-cyanoacetamide 0.0333333333333333 mM
+0.2
-0.1
-1.2
+0.3
+0.2
stress
McCas_H2_complete Bacitracin 0.003125 mM
-0.2
+0.1
-0.9
+0.4
+0.1
stress
Formate with Bacitracin 15.6 uM
-1.2
-0.3
-0.2
+0.0
+1.3
nitrogen source
H2 N-free with 10mM Putrescine
-0.2
+0.1
-0.7
+0.5
+0.1
stress
McCas_H2_complete 1,2-dimethyl-5-nitroimidazole 0.00833333333333333 mM
+0.3
+0.0
-1.1
+0.3
+0.2
stress
McCas_H2_complete 2-bromoethanesulfonic 0.00833333333333333 mM
+0.3
-0.3
-0.6
+0.5
-0.1
stress
Formate with Bacitracin 15.6 uM
-1.0
-0.5
-1.1
+1.1
+1.4
stress
McCas_H2_complete sulfate 125 mM
+0.1
+0.1
-0.9
+0.3
+0.4
nutrient t2
H2 deepwell casamino FREE
-0.4
+0.0
+0.4
+0.5
-0.2
rich t2
H2 McCas deepwell complete
-0.1
+0.4
-0.6
+0.6
+0.0
nutrient t2
H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
-0.5
+0.2
+0.3
+0.6
-0.2
nutrient t2
H2 deepwell autotrophic conditions
-0.5
+0.1
+0.5
+0.5
-0.2
nitrogen source
H2 N-free with 10mM L-tyrosine
+0.2
+0.1
+0.7
-0.3
+0.3
stress
McCas_formate_complete sulfate 125 mM
-0.1
-0.0
+1.0
+0.7
-0.2
stress
Formate with Nitrofurantoin 0.25 mM
-0.2
-0.0
+0.6
+0.5
+0.6
no stress control
McCas_H2_complete no stress control
+0.5
+0.4
-0.4
+1.0
+0.2
nitrogen source
H2 N-free with 5mM Inosine
+0.2
+0.3
+0.8
+0.5
+0.2
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