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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS02645 and MMP_RS08945 are separated by 112 nucleotides
MMP_RS08945 and MMP_RS02650 are separated by 38 nucleotides
MMP_RS02650 and MMP_RS02655 are separated by 145 nucleotides
MMP_RS02655 and MMP_RS02660 are separated by 460 nucleotides
MMP_RS02645: MMP_RS02645 - ArsR family transcriptional regulator, at 502,790 to 503,530
_RS02645
MMP_RS08945: MMP_RS08945 - hypothetical protein, at 503,643 to 503,786
_RS08945
MMP_RS02650: MMP_RS02650 - flavodoxin family protein, at 503,825 to 504,376
_RS02650
MMP_RS02655: MMP_RS02655 - terpene cyclase/mutase family protein, at 504,522 to 506,024
_RS02655
MMP_RS02660: MMP_RS02660 - hypothetical protein, at 506,485 to 507,573
_RS02660
Group
Condition
MMP
_RS02645
MMP
_RS08945
MMP
_RS02650
MMP
_RS02655
MMP
_RS02660
stress
Formate with hypochlorite 5 mM
-3.1
-3.3
-3.3
-0.1
-0.2
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
-3.2
-4.3
-2.5
+0.0
+0.1
stress
Formate with hypochlorite 5 mM
-3.0
-3.4
-2.7
-0.1
-0.1
stress
McCas_formate_complete 2,2-dibromo-2-cyanoacetamide 0.0333333333333333 mM
-2.6
-2.6
-1.8
+0.0
-0.1
stress
McCas_formate_complete 2,2-dibromo-2-cyanoacetamide 0.0333333333333333 mM
-1.9
-2.4
-1.9
-0.2
-0.1
stress
McCas_H2_complete 2,2-dibromo-2-cyanoacetamide 0.0333333333333333 mM
-0.7
-0.4
-0.6
+0.1
+0.2
nitrogen source
H2 N-free with 10mM Cytidine
+0.2
-0.3
-0.8
-0.1
-0.2
stress
McCas_formate_complete gold (III) chloride 0.0714285714285714 mM
-0.3
-0.7
-0.2
+0.3
-0.1
stress
McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM
-0.4
-0.2
-0.5
-0.0
+0.4
no stress control
McCas_H2_complete no stress control
-0.3
+0.4
-0.5
-0.3
-0.0
nitrogen source
H2 N-free with 10mM Thymidine
+0.4
-0.1
-0.8
+0.1
-0.3
nitrogen source
H2 N-free with 10mM L-tyrosine
+0.0
-0.6
-0.4
+0.5
-0.2
stress
McCas_formate_complete NO 0.025 mM
+0.4
+0.1
-0.8
-0.1
-0.1
stress
McCas_formate_complete dimetridazole 0.00416666666666667 mM
+0.1
-0.3
-0.7
+0.3
+0.1
no stress control
McCas_H2_complete no stress control
+0.1
+0.4
-0.9
-0.1
+0.0
stress
McCas_H2_complete nitrate 35.7142857142857 mM
+0.3
+0.2
-0.5
-0.2
-0.2
nitrogen source
H2 N-free with 10mM Uridine
+0.4
-0.6
-0.2
+0.1
-0.1
stress
McCas_formate_complete Fluorophosphate 62.5 mM
+0.1
-0.9
+0.3
+0.1
-0.1
nutrient t1
Mc formate, casamino free, with 10mM L-Methionine
+0.3
+0.4
-0.4
-0.1
-0.3
stress
McCas_H2_complete Bacitracin 0.003125 mM
+0.7
-0.3
-0.3
-0.2
-0.0
stress
McCas_H2_complete Zinc Pyrithione 0.0142857142857143 mM
+0.3
+0.5
-0.6
-0.2
-0.0
nitrogen source
H2 N-free with 10mM L-Alanine
+0.5
+0.1
-0.5
+0.1
-0.2
stress
McCas_H2_complete 8-hydroxy-nitroquinolone 0.0166666666666667 mM
+0.6
+0.3
-0.6
-0.0
+0.1
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
+1.0
-0.4
-0.2
-0.0
+0.1
stress
McCas_H2_complete phosphate monobasic 83.3333333333333 mM
+0.5
+0.4
-0.5
+0.2
-0.1
nutrient t2
H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
-0.3
-0.2
+0.5
+0.1
+0.4
stress
Formate with Neomycin 12.5 mM
+1.2
-0.1
-0.2
-0.1
-0.1
stress
McCas_H2_complete metavanadate 4.54545454545455 mM
+1.1
+0.1
-0.3
-0.1
+0.1
natural competence
H2 McCas- cells grown in liquid medium with neomycin
+0.8
-0.0
+0.5
-0.1
-0.1
nitrogen source
H2 N-free with 10mM L-Serine
+0.4
+0.4
+0.5
+0.1
-0.2
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