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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS02470 and MMP_RS02475 are separated by 154 nucleotides
MMP_RS02475 and MMP_RS02480 are separated by 98 nucleotides
MMP_RS02480 and MMP_RS02485 are separated by 2 nucleotides
MMP_RS02485 and MMP_RS02490 overlap by 14 nucleotides
MMP_RS02470: MMP_RS02470 - helix-turn-helix transcriptional regulator, at 463,612 to 463,974
_RS02470
MMP_RS02475: MMP_RS02475 - hypothetical protein, at 464,129 to 464,380
_RS02475
MMP_RS02480: MMP_RS02480 - hypothetical protein, at 464,479 to 464,997
_RS02480
MMP_RS02485: MMP_RS02485 - DUF2080 family transposase-associated protein, at 465,000 to 465,224
_RS02485
MMP_RS02490: MMP_RS02490 - hypothetical protein, at 465,211 to 465,405
_RS02490
Group
Condition
MMP
_RS02470
MMP
_RS02475
MMP
_RS02480
MMP
_RS02485
MMP
_RS02490
stress
McCas_H2_complete metronidazole 0.000833333333333333
-1.2
-0.5
-1.7
N.D.
-0.5
stress
McCas_formate_complete sulfate 125 mM
-2.2
-0.8
-0.3
N.D.
-0.5
stress
McCas_formate_complete Rifampicin 0.5 mM
-2.8
-0.2
-0.6
N.D.
-0.2
stress
McCas_formate_complete Fluorophosphate 62.5 mM
-1.2
+0.1
-1.1
N.D.
-1.0
stress
McCas_H2_complete Hydroxylamine 2.08333333333333 mM
-2.1
+0.4
+0.1
N.D.
-0.9
stress
McCas_H2_complete 2-bromoethanesulfonic 0.00833333333333333 mM
-2.6
+0.7
+0.0
N.D.
-0.3
stress
McCas_H2_complete Magnesium chloride 250 mM
-2.0
+0.2
-0.9
N.D.
+0.8
stress
McCas_H2_complete Thioridazine 0.1 mM
+1.4
-0.7
-1.2
N.D.
-1.2
stress
McCas_H2_complete 5-Fluorouracil 0.00833333333333333 mM
+0.4
+0.6
-0.8
N.D.
-1.5
stress
McCas_formate_complete sodium nitrite 0.416666666666667 mM
-1.5
-0.0
+1.2
N.D.
-0.7
stress
McCas_H2_complete Benzethonium chloride 0.00625 mM
+0.6
+0.4
+0.3
N.D.
-1.8
rich t1
H2 McCas deepwell complete
-1.1
+0.8
-0.7
N.D.
+0.6
stress
McCas_H2_complete Fluorophosphate 62.5 mM
+1.5
+0.1
-1.4
N.D.
-0.4
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
-1.8
-0.4
+1.0
N.D.
+1.0
stress
McCas_H2_complete Cadmium chloride hemipentahydrate 0.555555555555556 mM
-0.7
-0.3
-0.7
N.D.
+1.8
stress
McCas_H2_complete 1,2-dimethyl-5-nitroimidazole 0.00833333333333333 mM
-0.6
-0.4
-0.6
N.D.
+1.7
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
+1.2
+0.8
-0.8
N.D.
-0.7
nitrogen source
Mc_H2_N_Free L-Glutamine 10 mM
+1.4
-1.3
+0.2
N.D.
+0.2
stress
McCas_formate_complete Econazole nitrate salt 0.02 mM
+1.1
-0.2
+1.4
N.D.
-1.3
rich t2
H2 McCas deepwell complete
+1.4
+1.1
-1.3
N.D.
-0.1
stress
McCas_formate_complete sodium nitrite 0.416666666666667 mM
+2.0
+0.1
+0.5
N.D.
-1.2
stress
McCas_H2_complete 2,2-dibromo-2-cyanoacetamide 0.0333333333333333 mM
+0.7
+0.8
+1.3
N.D.
-1.3
stress
McCas_formate_complete Antimycin A 0.01 mM
+1.4
-0.6
+0.8
N.D.
+0.5
nitrogen source
H2 N-free with 10mM L-tyrosine
-0.7
+0.3
+1.8
N.D.
+0.8
stress
McCas_formate_complete gold (III) chloride 0.0714285714285714 mM
+0.7
-0.2
+1.7
N.D.
+0.5
no stress control
McCas_H2_complete no stress control
+0.9
+1.3
-0.3
N.D.
+0.9
natural competence
H2 McCas- cells incubated with 5000 ng DNA (pDNA pLW40neo) then transferred and grown in liquid medium with neomycin
+0.3
+3.8
+0.5
N.D.
-1.0
stress
McCas_H2_complete Chloride 250 mM
+0.7
+0.9
+2.1
N.D.
+0.0
stress
Formate with Bacitracin 15.6 uM
+2.0
+0.7
+0.9
N.D.
+0.5
natural competence
H2 McCas- cells grown in liquid medium with neomycin
-0.6
+3.0
+1.6
N.D.
+0.3
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