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Protein
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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS02455 and MMP_RS02460 are separated by 165 nucleotides
MMP_RS02460 and MMP_RS02465 are separated by 153 nucleotides
MMP_RS02465 and MMP_RS02470 are separated by 365 nucleotides
MMP_RS02470 and MMP_RS02475 are separated by 154 nucleotides
MMP_RS02455: MMP_RS02455 - hypothetical protein, at 458,525 to 459,142
_RS02455
MMP_RS02460: MMP_RS02460 - hypothetical protein, at 459,308 to 462,367
_RS02460
MMP_RS02465: MMP_RS02465 - hypothetical protein, at 462,521 to 463,246
_RS02465
MMP_RS02470: MMP_RS02470 - helix-turn-helix transcriptional regulator, at 463,612 to 463,974
_RS02470
MMP_RS02475: MMP_RS02475 - hypothetical protein, at 464,129 to 464,380
_RS02475
Group
Condition
MMP
_RS02455
MMP
_RS02460
MMP
_RS02465
MMP
_RS02470
MMP
_RS02475
stress
McCas_formate_complete sulfate 125 mM
-0.5
+0.0
-0.1
-2.2
-0.8
stress
McCas_H2_complete dimetridazole 0.000833333333333333 mM
-0.6
-0.1
+0.4
-2.7
-0.1
stress
McCas_formate_complete Rifampicin 0.5 mM
+0.2
+0.0
-0.1
-2.8
-0.2
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
+0.0
-0.1
-0.4
-1.8
-0.4
stress
H2 McCas with 10 mM Na2S
+0.0
+0.1
-0.0
-2.1
-0.4
stress
McCas_formate_complete 3-nitroxypropanol 0.00833333333333333 mM
-0.1
+0.1
-0.1
-1.5
-0.6
stress
McCas_H2_complete Hydroxylamine 2.08333333333333 mM
+0.0
+0.2
-0.4
-2.1
+0.4
stress
McCas_H2_complete 2-bromoethanesulfonic 0.00833333333333333 mM
-0.1
+0.1
+0.4
-2.6
+0.7
stress
McCas_H2_complete Bacitracin 0.003125 mM
-0.6
+0.1
+0.1
-1.4
+1.0
stress
McCas_formate_complete potassium hexahydroxoantimonate 0.5 mM
-0.3
-0.1
-0.2
+1.1
-0.9
nutrient t2
Formate deepwell acetate FREE
-0.5
+0.2
+0.1
-1.1
+1.1
stress
Formate with Nitrofurantoin 0.25 mM
+0.5
+0.1
-0.3
-1.1
+0.7
stress
McCas_formate_complete dimetridazole 0.00416666666666667 mM
+0.4
-0.0
+1.0
-0.6
-0.7
nitrogen source
Mc_H2_N_Free L-Glutamine 10 mM
-0.1
+0.2
-0.1
+1.4
-1.3
stress
McCas_formate_complete Antimycin A 0.01 mM
-0.4
+0.1
-0.1
+1.4
-0.6
stress
Formate McCas no stress control 2
-0.7
+0.2
+0.3
-0.5
+1.2
stress
McCas_H2_complete sodium iodide 250 mM
+0.5
-0.1
+0.3
-0.7
+1.0
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
+0.0
+0.2
+0.5
-0.8
+1.2
stress
McCas_H2_complete Thioridazine 0.1 mM
+0.3
+0.1
+0.3
+1.4
-0.7
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
+0.1
-0.0
-0.3
+1.7
+0.6
no stress control
McCas_H2_complete no stress control
+0.4
+0.1
-0.4
+0.9
+1.3
stress
McCas_H2_complete Hydroxylamine 1.04166666666667 mM
-0.1
+0.1
+0.1
+1.8
+0.6
stress
McCas_H2_complete Spiramycin 0.1 mM
+0.3
-0.1
+0.1
+1.5
+0.9
stress
McCas_formate_complete sodium nitrite 0.416666666666667 mM
+0.4
+0.1
+0.2
+2.0
+0.1
natural competence
H2 McCas- cells grown in liquid medium with neomycin
+0.5
-0.0
+0.0
-0.6
+3.0
stress
Formate with Bacitracin 15.6 uM
+0.3
+0.0
-0.1
+2.0
+0.7
rich t2
H2 McCas deepwell complete
+0.5
+0.1
-0.0
+1.4
+1.1
stress
H2 50 mM hypophosphite
-0.2
+1.4
+1.0
+1.0
+0.1
stress
H2 50 mM hypophosphite
-0.4
+1.9
+1.6
+0.4
+0.5
natural competence
H2 McCas- cells incubated with 5000 ng DNA (pDNA pLW40neo) then transferred and grown in liquid medium with neomycin
+0.1
+0.0
+0.1
+0.3
+3.8
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