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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS02300 and MMP_RS02305 are separated by 38 nucleotides
MMP_RS02305 and MMP_RS02310 are separated by 266 nucleotides
MMP_RS02310 and MMP_RS02315 are separated by 0 nucleotides
MMP_RS02315 and MMP_RS02320 overlap by 14 nucleotides
MMP_RS02300: MMP_RS02300 - NAD(P)H-dependent oxidoreductase, at 433,982 to 434,476
_RS02300
MMP_RS02305: MMP_RS02305 - DUF378 domain-containing protein, at 434,515 to 434,763
_RS02305
MMP_RS02310: MMP_RS02310 - RimK-like ATPgrasp N-terminal domain-containing protein, at 435,030 to 435,635
_RS02310
MMP_RS02315: MMP_RS02315 - RimK family alpha-L-glutamate ligase, at 435,636 to 436,586
_RS02315
MMP_RS02320: MMP_RS02320 - glutamate-cysteine ligase family protein, at 436,573 to 437,676
_RS02320
Group
Condition
MMP
_RS02300
MMP
_RS02305
MMP
_RS02310
MMP
_RS02315
MMP
_RS02320
stress
McCas_H2_complete Hydroxylamine 41.6666666666667 mM
-1.0
-0.2
-0.8
-0.2
-0.2
stress
Formate with Bacitracin 15.6 uM
-1.5
-0.1
+0.8
-0.9
-0.4
stress
McCas_formate_complete 2-bromoethanesulfonic 0.00833333333333333 mM
+0.3
+0.2
-2.1
+0.1
-0.2
nitrogen source
H2 N-free with 2mM Adenosine
-0.6
+0.5
-1.1
+0.4
-0.2
stress
McCas_H2_complete Bacitracin 0.003125 mM
+0.5
-0.1
-1.5
+0.6
+0.4
nutrient t1
Mc formate, casamino free, with 10mM L-Asparagine
-1.0
+0.3
+0.8
+0.2
-0.2
stress
McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
+0.9
+0.3
-0.4
-0.4
-0.4
nitrogen source
H2 N-free with 10mM Glycine
+1.0
-0.0
-0.9
-0.1
+0.3
stress
McCas_formate_complete gold (III) chloride 0.0714285714285714 mM
-1.0
+0.0
+1.2
+0.2
-0.2
stress
Formate 100 mM hypophosphite
-1.0
+0.2
+1.2
-0.0
+0.1
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
-0.8
+0.3
+0.7
+0.4
+0.2
stress
McCas_formate_complete 3-nitroxypropanol 0.000416666666666667 mM
-0.0
-0.1
+1.7
-0.5
+0.3
nitrogen source
H2 N-free with 10mM L-Threonine
+0.9
+0.2
+0.9
-0.2
-0.3
nitrogen source
Formate N-free with 2mM Adenosine
-0.7
-0.0
+2.3
+0.3
-0.3
nitrogen source
H2 N-free with 10mM NAG
-0.6
+0.2
+2.1
+0.2
+0.2
stress
McCas_H2_complete Econazole nitrate salt 0.02 mM
+0.5
-0.3
+1.7
+0.4
-0.3
stress
McCas_formate_complete Econazole nitrate salt 0.02 mM
-0.2
-0.0
+1.3
+1.1
+0.1
nutrient t1
H2 deepwell vitamin FREE
+0.3
+0.0
+1.0
+0.7
+0.3
iron
Iron excess (5x) , H2 media
+0.4
+0.0
+1.3
+0.3
+0.5
no stress control
McCas_H2_complete no stress control
+0.8
+0.4
+0.5
+0.8
+0.0
stress
McCas_H2_complete Chloride 250 mM
+0.8
+0.7
+0.7
+0.5
+0.4
stress
McCas_formate_complete Chloride 250 mM
+0.6
-0.0
+2.2
+0.3
+0.2
nitrogen source
H2 N-free with 10mM Cytidine
+1.0
+0.3
+1.9
+0.1
+0.0
stress
McCas_formate_complete dimetridazole 0.00416666666666667 mM
-0.3
-0.6
+3.9
+0.7
-0.2
stress
McCas_H2_complete Bacitracin 0.003125 mM
+1.0
+0.2
+1.8
+0.2
+0.5
nutrient t2
H2 deepwell vitamin FREE
+1.2
+0.1
+1.5
+0.6
+0.4
stress
McCas_H2_complete dimetridazole 0.00833333333333333 mM
+1.0
+0.1
+2.8
+0.2
-0.1
nitrogen source
H2 N-free with 10mM Uridine
+0.6
+0.7
+1.9
+0.3
+1.1
stress
McCas_H2_complete Hydroxylamine 2.08333333333333 mM
+1.2
+0.1
+2.8
+0.3
+0.3
nitrogen source
H2 N-free with 10mM Uridine
+1.1
+0.7
+2.3
+0.3
+1.3
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