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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS01645 and MMP_RS01650 are separated by 156 nucleotides
MMP_RS01650 and MMP_RS01655 are separated by 9 nucleotides
MMP_RS01655 and MMP_RS01660 are separated by 124 nucleotides
MMP_RS01660 and MMP_RS01665 are separated by 54 nucleotides
MMP_RS01645: MMP_RS01645 - SWIM zinc finger family protein, at 305,126 to 305,815
_RS01645
MMP_RS01650: MMP_RS01650 - sulfurtransferase TusA family protein, at 305,972 to 306,184
_RS01650
MMP_RS01655: MMP_RS01655 - DsrE family protein, at 306,194 to 306,538
_RS01655
MMP_RS01660: MMP_RS01660 - hypothetical protein, at 306,663 to 307,247
_RS01660
MMP_RS01665: MMP_RS01665 - DUF2111 domain-containing protein, at 307,302 to 307,685
_RS01665
Group
Condition
MMP
_RS01645
MMP
_RS01650
MMP
_RS01655
MMP
_RS01660
MMP
_RS01665
stress
McCas_formate_complete Cesium chloride 41.6666666666667 mM
-0.9
-6.3
-0.5
-0.6
-0.0
rich t2
H2 McCas, 5g/L bicarb, 40 psi H2CO2
-0.2
-3.8
-0.6
+0.0
-1.7
no stress control
McCas_H2_complete no stress control
-0.2
-0.5
-1.1
-0.4
-3.8
stress
Formate with hypochlorite 5 mM
-0.0
-1.9
+0.1
-0.1
-3.9
nutrient t2
H2 deepwell acetate and casamino FREE
-0.4
-3.5
-0.0
+0.8
-2.4
stress
McCas_formate_complete gold (III) chloride 0.0714285714285714 mM
-0.6
-2.4
+0.3
-0.0
-2.7
stress
Formate with hypochlorite 5 mM
-0.1
-1.5
+0.1
+0.1
-3.6
stress
McCas_H2_complete Phenazine ethosulfate 0.1 mM
-0.1
+0.9
-0.8
+0.1
-5.0
stress
McCas_H2_complete Nitrofurantoin 0.1 mM
-0.2
+0.3
-1.1
+0.3
-3.7
stress
McCas_H2_complete nitrate 35.7142857142857 mM
-0.5
+1.2
-0.5
-0.6
-3.9
stress
McCas_formate_complete Phenazine methosulfate 0.0333333333333333 mM
+1.1
+0.1
-1.5
-0.3
-3.2
stress
McCas_H2_complete Phenazine methosulfate 0.0333333333333333 mM
-0.2
+0.9
-0.5
-0.2
-3.9
stress
McCas_H2_complete Benzethonium chloride 0.00625 mM
+0.6
-4.1
-0.1
+0.4
-0.7
stress
Formate with nitrate 62.5 mM
-0.1
+0.9
-0.3
+0.3
-4.4
stress
McCas_H2_complete Chloride 250 mM
-1.9
+0.8
+0.4
-1.0
-1.7
stress
McCas_formate_complete Rifampicin 0.5 mM
+0.8
-1.3
-1.3
+0.6
-1.2
stress
McCas_H2_complete Irgasan 0.025 mM
+1.9
-1.5
-0.6
-0.4
-1.5
no stress control
McCas_H2_complete no stress control
+0.0
+1.0
+0.5
-1.0
-2.5
stress
McCas_formate_complete NO 0.025 mM
-0.6
+1.4
+0.6
-0.3
-2.9
stress
McCas_H2_complete 2,2-dibromo-2-cyanoacetamide 0.0333333333333333 mM
+0.3
+1.4
-0.6
-0.2
-2.7
nitrogen source
H2 N-free with 5mM Inosine
-0.6
-1.2
+1.3
+0.9
-1.7
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
+1.1
-1.3
-0.1
+1.4
-1.8
stress
McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM
-0.3
-1.6
+2.1
+0.7
-1.3
stress
McCas_formate_complete sulfate 125 mM
+1.7
+0.9
-1.1
-1.0
-0.7
nutrient t2
H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
-0.3
-0.9
+1.2
+1.3
-1.5
stress
McCas_H2_complete Cesium chloride 41.6666666666667 mM
+1.9
+0.7
-0.2
-0.6
-1.8
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
-0.0
+0.8
+1.1
+1.2
-2.6
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
-0.4
+2.6
-1.2
+0.4
-0.5
stress
McCas_formate_complete Spiramycin 0.1 mM
+0.2
+2.2
-0.9
+0.7
-1.2
stress
McCas_H2_complete sodium bromide 250 mM
+1.2
+4.7
-0.3
+0.4
-0.5
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