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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS01420 and MMP_RS01425 are separated by 229 nucleotides
MMP_RS01425 and MMP_RS01430 are separated by 17 nucleotides
MMP_RS01430 and MMP_RS01435 are separated by 35 nucleotides
MMP_RS01435 and MMP_RS01440 are separated by 39 nucleotides
MMP_RS01420: MMP_RS01420 - hypothetical protein, at 263,471 to 263,668
_RS01420
MMP_RS01425: MMP_RS01425 - tyrosine--tRNA ligase, at 263,898 to 264,827
_RS01425
MMP_RS01430: MMP_RS01430 - mechanosensitive ion channel family protein, at 264,845 to 265,900
_RS01430
MMP_RS01435: MMP_RS01435 - DMT family transporter, at 265,936 to 266,379
_RS01435
MMP_RS01440: MMP_RS01440 - NAAT family transporter, at 266,419 to 267,060
_RS01440
Group
Condition
MMP
_RS01420
MMP
_RS01425
MMP
_RS01430
MMP
_RS01435
MMP
_RS01440
stress
McCas_H2_complete 5-Fluorouracil 0.00833333333333333 mM
-3.3
N.D.
-0.6
-0.4
-0.8
nitrogen source
H2 N-free with 10mM L-Glutamic
+0.4
N.D.
-0.9
-1.2
-0.9
nitrogen source
H2 N-free with 10mM L-Proline
+0.3
N.D.
+0.1
-0.0
-2.2
stress
McCas_H2_complete sulfate 125 mM
-1.3
N.D.
-0.6
-0.4
+0.4
nutrient t1
Mc formate, casamino free, with 10mM L-Proline
-0.6
N.D.
+0.1
+0.5
-1.7
nutrient t1
Mc formate, casamino free, with 5mM L-Glutamate and 5mM L-Proline
-0.5
N.D.
+0.0
+0.5
-1.6
nitrogen source
H2 N-free with 10mM L-Proline
+0.2
N.D.
+0.3
+0.3
-2.2
nitrogen source
H2 N-free with 10mM L-Valine
+0.3
N.D.
-0.2
+0.4
-1.8
stress
McCas_H2_complete Hydroxylamine 1.04166666666667 mM
-0.8
N.D.
+0.2
+0.5
-1.2
natural competence
H2 McCas- cells grown in liquid medium with neomycin
+0.4
N.D.
+0.3
-0.3
-1.5
stress
McCas_H2_complete Benzethonium chloride 0.003125 mM
-1.1
N.D.
-0.7
+1.0
-0.2
nitrogen source
H2 N-free with 10mM L-Methionine
+0.2
N.D.
-0.1
+0.8
-1.6
nutrient t1
Mc formate, casamino free, with 10mM L-Methionine
+0.7
N.D.
-0.1
+0.5
-1.8
natural competence
H2 McCas- cells incubated with 5000 ng DNA (pDNA pLW40neo) then transferred and grown in liquid medium with neomycin
+0.9
N.D.
+0.6
-0.5
-1.6
stress
McCas_H2_complete Thioridazine 0.1 mM
+1.3
N.D.
-1.2
-0.4
-0.0
stress
McCas_H2_complete Chloride 500 mM
+0.7
N.D.
-0.3
+0.8
-1.1
stress
McCas_H2_complete Antimycin A 0.01 mM
+1.4
N.D.
-0.6
-0.5
-0.0
nitrogen source
H2 N-free with 10mM L-Alanine
+0.9
N.D.
+0.1
+0.6
-1.0
nitrogen source
H2 N-free with 10mM Cytidine
-0.1
N.D.
+1.0
+1.5
-1.3
stress
McCas_H2_complete Sulfaquinoxaline 0.1 mM
+0.5
N.D.
+1.1
+0.4
-0.7
nitrogen source
H2 N-free with 10mM Cytidine
-0.5
N.D.
+1.2
+1.4
-0.7
stress
McCas_formate_complete hypophosphite 125 mM
+1.6
N.D.
+0.5
+0.3
-0.7
stress
McCas_H2_complete Sulfaquinoxaline 0.1 mM
+0.8
N.D.
+1.0
+0.9
-0.3
nitrogen source
H2 N-free with 5mM Inosine
-0.1
N.D.
+1.7
+2.0
-0.7
stress
McCas_H2_complete silver chloride 0.5 mM
+1.7
N.D.
+0.9
+0.6
-0.1
nitrogen source
H2 N-free with 5mM Inosine
-0.1
N.D.
+1.7
+2.0
-0.1
stress
Formate 100 mM hypophosphite
+1.0
N.D.
+2.0
+2.0
-0.2
nitrogen source
H2 N-free with 10mM Uridine
-1.0
N.D.
+2.7
+3.8
+0.1
nitrogen source
H2 N-free with 10mM Uridine
+0.1
N.D.
+2.5
+3.1
+0.0
stress
Formate 100 mM hypophosphite
+1.1
N.D.
+2.3
+2.2
+0.1
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