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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS01250 and MMP_RS01255 are separated by 33 nucleotides
MMP_RS01255 and MMP_RS01260 are separated by 40 nucleotides
MMP_RS01260 and MMP_RS01265 are separated by 81 nucleotides
MMP_RS01265 and MMP_RS01270 are separated by 14 nucleotides
MMP_RS01250: MMP_RS01250 - tRNA (guanine(26)-N(2))-dimethyltransferase, at 236,852 to 237,973
_RS01250
MMP_RS01255: MMP_RS01255 - amino acid ABC transporter ATP-binding protein, at 238,007 to 238,738
_RS01255
MMP_RS01260: MMP_RS01260 - HDIG domain-containing protein, at 238,779 to 239,465
_RS01260
MMP_RS01265: MMP_RS01265 - hypothetical protein, at 239,547 to 239,915
_RS01265
MMP_RS01270: MMP_RS01270 - prepilin peptidase, at 239,930 to 240,970
_RS01270
Group
Condition
MMP
_RS01250
MMP
_RS01255
MMP
_RS01260
MMP
_RS01265
MMP
_RS01270
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
-2.1
+0.4
-1.4
-9.8
-1.2
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations
-1.8
+0.7
-1.5
-9.9
-1.2
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
-1.3
+0.3
-2.7
-9.3
-0.8
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations
-4.6
+0.2
+0.2
-7.1
-0.3
nutrient t2
H2 deepwell acetate FREE
-0.6
-0.5
+0.1
-8.6
-1.7
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations
-4.9
+0.2
+0.0
-6.0
-0.2
nutrient t2
H2 deepwell acetate and vitamin FREE
-1.0
-0.4
-1.0
-6.6
-1.6
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
-2.8
+0.2
-0.5
-7.4
-0.1
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
-4.7
+0.1
+0.1
-6.0
+0.1
nutrient t2
H2 deepwell acetate FREE
-0.8
-0.8
+0.6
-7.6
-1.7
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 10 generations
-0.6
-0.1
-1.2
-7.8
-0.4
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations
-3.2
+0.1
-0.0
-6.7
+0.2
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 20 generations
-3.7
+0.2
-0.1
-6.0
+0.2
nutrient t2
H2 deepwell acetate FREE
-0.6
+0.3
-0.7
-6.4
-1.8
rich t2
H2 McCas deepwell complete
-0.5
-0.1
-1.2
-5.1
-1.9
no stress control
McCas_H2_complete no stress control
+0.5
-0.6
-0.3
-5.5
-2.6
nutrient t2
H2 deepwell acetate and vitamin FREE
-0.6
+0.1
+0.3
-6.4
-1.7
stress
McCas_H2_complete 2,2-dibromo-2-cyanoacetamide 0.0333333333333333 mM
+1.1
-0.3
-0.2
-6.2
-2.3
stress
McCas_H2_complete Chlorpromazine 0.0333333333333333 mM
+0.2
-1.2
-0.1
-3.5
-3.1
nutrient t2
H2 deepwell vitamin FREE
-0.3
-0.0
+0.2
-5.8
-1.5
stress
McCas_H2_complete Nitrofurantoin 0.1 mM
+0.7
-0.3
+0.0
-5.1
-2.4
no stress control
McCas_H2_complete no stress control
+0.6
-0.9
-0.0
-3.8
-2.9
stress
H2 McCas with 1 mM (NH4)2S control
-1.1
-0.3
+0.4
-4.3
-1.6
nutrient t2
Formate deepwell acetate FREE
-2.6
+0.2
+0.8
-4.9
+0.1
no stress control
McCas_H2_complete no stress control
+0.4
-0.9
+0.4
-3.7
-2.5
stress
McCas_H2_complete metronidazole 0.000833333333333333
+1.0
-1.3
-0.0
-3.1
-2.8
stress
McCas_H2_complete 2,2-dibromo-2-cyanoacetamide 0.0333333333333333 mM
+0.7
-0.7
+0.4
-4.1
-2.0
stress
McCas_H2_complete Hydroxylamine 2.08333333333333 mM
+1.8
-0.8
-0.3
-3.1
-2.4
nutrient t2
H2 deepwell autotrophic conditions
-0.9
+0.0
-1.5
-3.9
+1.7
nutrient t2
H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
-1.2
+1.7
+0.1
-0.8
+4.6
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