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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS00985 and MMP_RS00990 are separated by 112 nucleotides
MMP_RS00990 and MMP_RS00995 are separated by 135 nucleotides
MMP_RS00995 and MMP_RS01000 are separated by 9 nucleotides
MMP_RS01000 and MMP_RS01005 are separated by 174 nucleotides
MMP_RS00985: MMP_RS00985 - CDC48 family AAA ATPase, at 183,704 to 186,070
_RS00985
MMP_RS00990: MMP_RS00990 - hypothetical protein, at 186,183 to 186,542
_RS00990
MMP_RS00995: MMP_RS00995 - phosphoribosylformylglycinamidine synthase I, at 186,678 to 187,487
_RS00995
MMP_RS01000: MMP_RS01000 - AIR synthase related protein, at 187,497 to 190,466
_RS01000
MMP_RS01005: MMP_RS01005 - riboflavin synthase, at 190,641 to 191,111
_RS01005
Group
Condition
MMP
_RS00985
MMP
_RS00990
MMP
_RS00995
MMP
_RS01000
MMP
_RS01005
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
-8.2
-0.2
N.D.
N.D.
-6.1
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
-8.7
+0.1
N.D.
N.D.
-5.9
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
-8.6
+0.0
N.D.
N.D.
-5.4
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations
-7.9
-0.1
N.D.
N.D.
-5.9
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations
-7.8
-0.1
N.D.
N.D.
-5.9
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations
-8.6
+0.6
N.D.
N.D.
-5.4
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 20 generations
-7.0
-0.2
N.D.
N.D.
-5.0
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations
-5.9
-0.2
N.D.
N.D.
-5.8
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
-8.0
+1.2
N.D.
N.D.
-5.0
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 10 generations
-4.8
+0.1
N.D.
N.D.
-5.7
nutrient t2
H2 deepwell acetate and vitamin FREE
-4.7
+0.5
N.D.
N.D.
-4.9
nutrient t2
Formate deepwell acetate and casamino FREE
-3.4
-0.2
N.D.
N.D.
-5.4
nutrient t2
Formate deepwell autotrophic conditions
-3.3
-0.5
N.D.
N.D.
-5.3
rich t2
H2 McCas deepwell complete
-4.4
+0.4
N.D.
N.D.
-4.8
nutrient t2
Formate deepwell autotrophic conditions
-3.0
-0.5
N.D.
N.D.
-5.2
nutrient t2
Formate deepwell acetate and casamino FREE
-4.4
-0.0
N.D.
N.D.
-4.2
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 10 generations
-3.5
+0.7
N.D.
N.D.
-5.6
rich t2
H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2
-2.9
+0.0
N.D.
N.D.
-5.6
rich t2
H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2
-3.0
+0.1
N.D.
N.D.
-5.4
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations
-2.6
+0.2
N.D.
N.D.
-5.8
nutrient t2
H2 deepwell acetate FREE
-4.3
+1.0
N.D.
N.D.
-4.9
nutrient t2
H2 deepwell acetate and vitamin FREE
-3.7
+0.6
N.D.
N.D.
-5.0
nutrient t2
H2 deepwell acetate FREE
-4.4
+0.8
N.D.
N.D.
-4.3
nutrient t2
H2 deepwell acetate FREE
-3.2
+0.4
N.D.
N.D.
-5.1
nutrient t2
H2 deepwell vitamin FREE
-3.6
+0.6
N.D.
N.D.
-4.8
no stress control
McCas_H2_complete no stress control
-3.1
+0.5
N.D.
N.D.
-4.9
nutrient t2
H2 deepwell casamino FREE
-3.1
+0.9
N.D.
N.D.
-5.2
nutrient t2
H2 deepwell acetate and vitamin FREE
-3.2
+0.8
N.D.
N.D.
-4.9
stress
H2 McCas with 1 hour oxygen exposure
-2.1
+1.0
N.D.
N.D.
-5.4
stress
H2 McCas with 40 minute oxygen exposure
-2.6
+0.9
N.D.
N.D.
-4.8
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