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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS00975 and MMP_RS00980 are separated by 142 nucleotides
MMP_RS00980 and MMP_RS00985 are separated by 24 nucleotides
MMP_RS00985 and MMP_RS00990 are separated by 112 nucleotides
MMP_RS00990 and MMP_RS00995 are separated by 135 nucleotides
MMP_RS00975: MMP_RS00975 - HD domain-containing protein, at 181,696 to 183,072
_RS00975
MMP_RS00980: MMP_RS00980 - hypothetical protein, at 183,215 to 183,679
_RS00980
MMP_RS00985: MMP_RS00985 - CDC48 family AAA ATPase, at 183,704 to 186,070
_RS00985
MMP_RS00990: MMP_RS00990 - hypothetical protein, at 186,183 to 186,542
_RS00990
MMP_RS00995: MMP_RS00995 - phosphoribosylformylglycinamidine synthase I, at 186,678 to 187,487
_RS00995
Group
Condition
MMP
_RS00975
MMP
_RS00980
MMP
_RS00985
MMP
_RS00990
MMP
_RS00995
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
-0.6
+0.1
-8.2
-0.2
N.D.
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
-0.0
-0.0
-8.7
+0.1
N.D.
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations
-0.2
+0.0
-7.9
-0.1
N.D.
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations
-0.2
+0.1
-7.8
-0.1
N.D.
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
+0.7
+0.3
-8.6
+0.0
N.D.
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 20 generations
-0.0
-0.1
-7.0
-0.2
N.D.
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations
+0.9
-0.2
-8.6
+0.6
N.D.
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations
+0.0
-0.1
-5.9
-0.2
N.D.
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
+1.3
+0.1
-8.0
+1.2
N.D.
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 10 generations
+0.3
-0.0
-4.8
+0.1
N.D.
nitrogen source
H2 N-free with 10mM L-Valine
-0.0
+0.2
-4.5
+0.3
N.D.
nutrient t2
Formate deepwell acetate and casamino FREE
+0.5
-0.0
-4.4
-0.0
N.D.
nutrient t2
H2 deepwell acetate and vitamin FREE
+0.1
+0.4
-4.7
+0.5
N.D.
rich t2
H2 McCas deepwell complete
+0.3
+0.2
-4.4
+0.4
N.D.
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
+0.5
+0.2
-3.0
-1.0
N.D.
nutrient t2
H2 deepwell acetate FREE
+0.2
+0.5
-4.4
+0.8
N.D.
no stress control
McCas_H2_complete no stress control
+0.1
+0.4
-3.9
+0.6
N.D.
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
+0.7
+0.4
-2.4
-1.4
N.D.
nutrient t2
H2 deepwell vitamin FREE
+0.0
+0.5
-3.6
+0.6
N.D.
nutrient t2
H2 deepwell acetate and vitamin FREE
+0.1
+0.6
-3.7
+0.6
N.D.
nutrient t2
H2 deepwell acetate FREE
+0.2
+0.8
-4.3
+1.0
N.D.
nitrogen source
H2 N-free with 2.5mM Cytosine
+0.6
+0.2
-3.6
+0.5
N.D.
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 10 generations
+0.5
+0.0
-3.5
+0.7
N.D.
nitrogen source
H2 N-free with 10mM Putrescine
+0.4
+0.3
-3.5
+0.7
N.D.
nutrient t2
H2 deepwell acetate and vitamin FREE
+0.4
+0.4
-3.2
+0.8
N.D.
nitrogen source
H2 N-free with 10mM L-Glutamic
+0.7
+0.3
-3.1
+0.8
N.D.
stress
McCas_H2_complete Benzethonium chloride 0.003125 mM
+0.4
+0.3
-2.7
+1.6
N.D.
stress
McCas_H2_complete phosphate monobasic 83.3333333333333 mM
+0.2
+1.3
-2.3
+0.9
N.D.
nitrogen source
H2 N-free with 10mM Uridine
+3.9
-0.0
-2.1
-0.8
N.D.
nitrogen source
H2 N-free with 10mM Uridine
+4.1
+0.2
-2.3
-0.3
N.D.
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