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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS00970 and MMP_RS00975 overlap by 4 nucleotides
MMP_RS00975 and MMP_RS00980 are separated by 142 nucleotides
MMP_RS00980 and MMP_RS00985 are separated by 24 nucleotides
MMP_RS00985 and MMP_RS00990 are separated by 112 nucleotides
MMP_RS00970: MMP_RS00970 - coenzyme F430 synthase, at 180,497 to 181,699
_RS00970
MMP_RS00975: MMP_RS00975 - HD domain-containing protein, at 181,696 to 183,072
_RS00975
MMP_RS00980: MMP_RS00980 - hypothetical protein, at 183,215 to 183,679
_RS00980
MMP_RS00985: MMP_RS00985 - CDC48 family AAA ATPase, at 183,704 to 186,070
_RS00985
MMP_RS00990: MMP_RS00990 - hypothetical protein, at 186,183 to 186,542
_RS00990
Group
Condition
MMP
_RS00970
MMP
_RS00975
MMP
_RS00980
MMP
_RS00985
MMP
_RS00990
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
N.D.
-0.6
+0.1
-8.2
-0.2
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
N.D.
-0.0
-0.0
-8.7
+0.1
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations
N.D.
-0.2
+0.0
-7.9
-0.1
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations
N.D.
-0.2
+0.1
-7.8
-0.1
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
N.D.
+0.7
+0.3
-8.6
+0.0
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 20 generations
N.D.
-0.0
-0.1
-7.0
-0.2
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations
N.D.
+0.9
-0.2
-8.6
+0.6
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations
N.D.
+0.0
-0.1
-5.9
-0.2
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
N.D.
+1.3
+0.1
-8.0
+1.2
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 10 generations
N.D.
+0.3
-0.0
-4.8
+0.1
nitrogen source
H2 N-free with 10mM L-Valine
N.D.
-0.0
+0.2
-4.5
+0.3
nutrient t2
Formate deepwell acetate and casamino FREE
N.D.
+0.5
-0.0
-4.4
-0.0
nutrient t2
H2 deepwell acetate and vitamin FREE
N.D.
+0.1
+0.4
-4.7
+0.5
rich t2
H2 McCas deepwell complete
N.D.
+0.3
+0.2
-4.4
+0.4
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
N.D.
+0.5
+0.2
-3.0
-1.0
nutrient t2
H2 deepwell acetate FREE
N.D.
+0.2
+0.5
-4.4
+0.8
no stress control
McCas_H2_complete no stress control
N.D.
+0.1
+0.4
-3.9
+0.6
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
N.D.
+0.7
+0.4
-2.4
-1.4
nutrient t2
H2 deepwell vitamin FREE
N.D.
+0.0
+0.5
-3.6
+0.6
nutrient t2
H2 deepwell acetate and vitamin FREE
N.D.
+0.1
+0.6
-3.7
+0.6
nutrient t2
H2 deepwell acetate FREE
N.D.
+0.2
+0.8
-4.3
+1.0
nitrogen source
H2 N-free with 2.5mM Cytosine
N.D.
+0.6
+0.2
-3.6
+0.5
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 10 generations
N.D.
+0.5
+0.0
-3.5
+0.7
nitrogen source
H2 N-free with 10mM Putrescine
N.D.
+0.4
+0.3
-3.5
+0.7
nutrient t2
H2 deepwell acetate and vitamin FREE
N.D.
+0.4
+0.4
-3.2
+0.8
nitrogen source
H2 N-free with 10mM L-Glutamic
N.D.
+0.7
+0.3
-3.1
+0.8
stress
McCas_H2_complete Benzethonium chloride 0.003125 mM
N.D.
+0.4
+0.3
-2.7
+1.6
stress
McCas_H2_complete phosphate monobasic 83.3333333333333 mM
N.D.
+0.2
+1.3
-2.3
+0.9
nitrogen source
H2 N-free with 10mM Uridine
N.D.
+3.9
-0.0
-2.1
-0.8
nitrogen source
H2 N-free with 10mM Uridine
N.D.
+4.1
+0.2
-2.3
-0.3
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