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Fitness for 5 genes in
Methanococcus maripaludis S2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MMP_RS00965 and MMP_RS00970 are separated by 81 nucleotides
MMP_RS00970 and MMP_RS00975 overlap by 4 nucleotides
MMP_RS00975 and MMP_RS00980 are separated by 142 nucleotides
MMP_RS00980 and MMP_RS00985 are separated by 24 nucleotides
MMP_RS00965: MMP_RS00965 - hypothetical protein, at 180,131 to 180,415
_RS00965
MMP_RS00970: MMP_RS00970 - coenzyme F430 synthase, at 180,497 to 181,699
_RS00970
MMP_RS00975: MMP_RS00975 - HD domain-containing protein, at 181,696 to 183,072
_RS00975
MMP_RS00980: MMP_RS00980 - hypothetical protein, at 183,215 to 183,679
_RS00980
MMP_RS00985: MMP_RS00985 - CDC48 family AAA ATPase, at 183,704 to 186,070
_RS00985
Group
Condition
MMP
_RS00965
MMP
_RS00970
MMP
_RS00975
MMP
_RS00980
MMP
_RS00985
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
-0.1
N.D.
-0.6
+0.1
-8.2
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 20 generations
+0.0
N.D.
-0.0
-0.0
-8.7
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
-0.7
N.D.
+0.7
+0.3
-8.6
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations
-0.1
N.D.
-0.2
+0.0
-7.9
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations
+0.1
N.D.
-0.2
+0.1
-7.8
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations
+0.4
N.D.
+0.9
-0.2
-8.6
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 20 generations
-0.0
N.D.
-0.0
-0.1
-7.0
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
-0.3
N.D.
+1.3
+0.1
-8.0
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations
+0.1
N.D.
+0.0
-0.1
-5.9
stress
McCas_H2_complete Zinc Pyrithione 0.0142857142857143 mM
-1.3
N.D.
+0.0
-0.0
-3.7
nitrogen source
H2 N-free with 10mM L-Valine
-0.3
N.D.
-0.0
+0.2
-4.5
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 10 generations
-0.1
N.D.
+0.3
-0.0
-4.8
no stress control
McCas_H2_complete no stress control
-1.0
N.D.
+0.1
+0.4
-3.9
nutrient t2
Formate deepwell acetate and casamino FREE
-0.1
N.D.
+0.5
-0.0
-4.4
nutrient t2
H2 deepwell acetate and vitamin FREE
+0.2
N.D.
+0.1
+0.4
-4.7
nitrogen source
H2 N-free with 10mM Cytidine
-0.8
N.D.
+0.3
+0.1
-3.5
rich t2
H2 McCas deepwell complete
+0.0
N.D.
+0.3
+0.2
-4.4
nutrient t2
H2 deepwell acetate FREE
-0.2
N.D.
+0.2
+0.5
-4.4
nutrient t2
H2 deepwell acetate FREE
-0.6
N.D.
+0.2
+0.8
-4.3
nutrient t2
H2 deepwell vitamin FREE
-0.7
N.D.
+0.0
+0.5
-3.6
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
-1.2
N.D.
+0.5
+0.2
-3.0
nitrogen source
H2 N-free with 10mM L-Methionine
-0.7
N.D.
+0.2
+0.3
-3.2
nitrogen source
H2 N-free with 10mM L-Leucine
-0.6
N.D.
+0.2
+0.4
-3.3
nitrogen source
H2 N-free with 10mM Putrescine
-0.4
N.D.
+0.4
+0.3
-3.5
nitrogen source
H2 N-free with 5mM Inosine
+0.5
N.D.
+0.1
+0.3
-4.1
nitrogen source
H2 N-free with 2.5mM Cytosine
-0.2
N.D.
+0.6
+0.2
-3.6
nutrient t2
H2 deepwell acetate and vitamin FREE
+0.8
N.D.
+0.1
+0.6
-3.7
rich t2
H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE
+1.0
N.D.
+0.1
+0.2
-3.2
nitrogen source
H2 N-free with 10mM Uridine
+0.4
N.D.
+3.9
-0.0
-2.1
nitrogen source
H2 N-free with 10mM Uridine
+0.7
N.D.
+4.1
+0.2
-2.3
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