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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS00935 and MMP_RS00940 are separated by 0 nucleotides
MMP_RS00940 and MMP_RS00945 are separated by 1 nucleotides
MMP_RS00945 and MMP_RS00950 are separated by 112 nucleotides
MMP_RS00950 and MMP_RS00955 are separated by 21 nucleotides
MMP_RS00935: MMP_RS00935 - MATE family efflux transporter, at 174,448 to 175,830
_RS00935
MMP_RS00940: MMP_RS00940 - daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein, at 175,831 to 176,799
_RS00940
MMP_RS00945: MMP_RS00945 - PadR family transcriptional regulator, at 176,801 to 177,259
_RS00945
MMP_RS00950: MMP_RS00950 - site-2 protease family protein, at 177,372 to 178,499
_RS00950
MMP_RS00955: MMP_RS00955 - coenzyme gamma-F420-2:alpha-L-glutamate ligase, at 178,521 to 179,378
_RS00955
Group
Condition
MMP
_RS00935
MMP
_RS00940
MMP
_RS00945
MMP
_RS00950
MMP
_RS00955
nutrient t2
Formate deepwell acetate FREE
-0.1
-0.4
-5.6
+0.3
+0.2
stress
McCas_formate_complete 3-nitroxypropanol 0.00833333333333333 mM
+0.5
-0.1
-5.8
+0.3
-0.0
nitrogen source
H2 N-free with 10mM L-Glutamic
-0.2
+0.1
-1.1
-0.8
-2.0
stress
McCas_H2_complete Sulfaquinoxaline 0.1 mM
+0.2
+0.1
-3.6
+0.2
-0.3
stress
Formate McCas no stress control 2
-0.2
-0.2
-3.1
+0.4
+0.1
nitrogen source
H2 N-free with 10mM L-Glutamic
-0.5
+0.1
-0.1
-0.4
-2.1
stress
McCas_formate_complete Sulfaquinoxaline 0.1 mM
+0.2
+0.3
-2.0
-0.3
-0.5
stress
McCas_formate_complete Chloride 250 mM
+0.1
-0.1
-2.0
+0.5
-0.4
stress
McCas_H2_complete perchlorate 250 mM
-0.3
+0.2
-2.0
+0.3
-0.0
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
+0.1
+0.5
+0.1
-1.3
-1.1
nutrient t2
H2 deepwell acetate and casamino FREE
-0.0
+0.2
-2.2
+0.4
+0.3
stress
McCas_H2_complete 2-bromoethanesulfonic 0.00833333333333333 mM
+0.7
-0.3
-1.5
+0.4
-0.3
stress
H2 50 mM hypophosphite
+0.4
+0.1
-1.5
+0.3
+0.6
stress
McCas_formate_complete nitrate 35.7142857142857 mM
+0.8
+0.6
-1.3
+0.0
-0.1
stress
McCas_formate_complete 2-bromoethanesulfonic 0.1 mM
+0.2
+0.6
-1.3
+0.4
+0.3
stress
McCas_H2_complete Lithium chloride 250 mM
+0.2
-0.2
-1.1
+1.2
+0.3
stress
McCas_formate_complete Antimycin A 0.01 mM
+0.3
+0.7
-1.5
+0.2
+0.6
nitrogen source
H2 N-free with 5mM Inosine
+0.1
+1.1
-1.1
-0.1
+0.6
stress
Formate with nitrate 62.5 mM
+0.5
+0.5
+1.0
-0.6
+0.2
stress
McCas_H2_complete Anhydrotetracycline 0.05 mM
+0.1
+0.3
+1.5
+0.4
-0.5
stress
McCas_H2_complete Sulfaquinoxaline 0.1 mM
-0.2
+0.5
+1.8
-0.2
-0.1
stress
McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM
-0.1
+0.2
+2.4
-0.3
-0.3
stress
McCas_H2_complete Thioridazine 0.1 mM
+0.5
+0.6
+1.7
-0.1
-0.5
stress
McCas_H2_complete phosphate monobasic 83.3333333333333 mM
-0.3
+0.6
+0.9
+0.6
+0.5
stress
McCas_H2_complete Chloride 500 mM
-0.2
+0.6
+1.2
+1.0
-0.0
nutrient t2
H2 deepwell acetate FREE
+0.3
+0.5
+1.4
+0.3
+0.3
stress
McCas_formate_complete Econazole nitrate salt 0.02 mM
+0.2
+0.4
+1.3
+0.6
+0.3
nutrient t2
H2 deepwell acetate and vitamin FREE
+0.3
+0.4
+1.7
+0.1
+0.5
stress
McCas_H2_complete dimetridazole 0.00833333333333333 mM
+0.0
+0.1
+2.6
+0.2
+0.4
stress
McCas_H2_complete Fluorophosphate 62.5 mM
-0.0
+0.5
+1.3
+1.5
+0.5
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