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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS00865 and MMP_RS08930 are separated by 268 nucleotides
MMP_RS08930 and MMP_RS00870 are separated by 25 nucleotides
MMP_RS00870 and MMP_RS00875 are separated by 49 nucleotides
MMP_RS00875 and MMP_RS00880 are separated by 236 nucleotides
MMP_RS00865: MMP_RS00865 - SLC13 family permease, at 162,132 to 163,472
_RS00865
MMP_RS08930: MMP_RS08930 - hypothetical protein, at 163,741 to 163,899
_RS08930
MMP_RS00870: MMP_RS00870 - homocitrate synthase family protein, at 163,925 to 165,085
_RS00870
MMP_RS00875: MMP_RS00875 - methanogenesis marker 3 protein, at 165,135 to 166,640
_RS00875
MMP_RS00880: MMP_RS00880 - ribosome assembly RNA-binding protein YhbY, at 166,877 to 167,260
_RS00880
Group
Condition
MMP
_RS00865
MMP
_RS08930
MMP
_RS00870
MMP
_RS00875
MMP
_RS00880
stress
McCas_formate_complete arsenate 0.416666666666667 mM
+0.1
-1.2
N.D.
N.D.
-1.1
stress
McCas_formate_complete Lithium chloride 125 mM
-0.0
-2.0
N.D.
N.D.
+0.1
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
+0.1
+0.1
N.D.
N.D.
-2.0
stress
McCas_formate_complete Rifampicin 0.5 mM
-1.2
+0.3
N.D.
N.D.
-0.7
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations
-0.1
+0.7
N.D.
N.D.
-1.8
stress
McCas_H2_complete Chloride 250 mM
+0.6
-0.2
N.D.
N.D.
-1.2
rich t2
H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE
+0.3
+0.3
N.D.
N.D.
-1.5
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations
+0.0
+0.8
N.D.
N.D.
-1.5
stress
McCas_H2_complete Chloride 250 mM
+0.3
+0.8
N.D.
N.D.
-1.7
stress
McCas_formate_complete sulfate 125 mM
+0.7
-1.9
N.D.
N.D.
+0.5
nitrogen source
H2 N-free with 10mM L-tyrosine
+0.2
-1.3
N.D.
N.D.
+0.9
stress
McCas_H2_complete Antimycin A 0.01 mM
+1.1
-0.0
N.D.
N.D.
-1.1
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
-1.1
+0.9
N.D.
N.D.
+0.1
stress
McCas_H2_complete 2-bromoethanesulfonic 0.00833333333333333 mM
+0.4
+0.8
N.D.
N.D.
-1.1
stress
McCas_H2_complete Phenazine ethosulfate 0.1 mM
-0.1
+1.3
N.D.
N.D.
-1.0
stress
McCas_formate_complete Fluorophosphate 62.5 mM
-0.6
+1.3
N.D.
N.D.
-0.4
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
-0.9
+0.5
N.D.
N.D.
+0.8
nitrogen source
Formate N-free with 2mM Adenosine
+0.4
-0.7
N.D.
N.D.
+1.3
nutrient t2
H2 deepwell vitamin and casamino FREE
+0.5
+1.2
N.D.
N.D.
-0.5
nutrient t2
H2 deepwell acetate and vitamin FREE
+1.1
+1.1
N.D.
N.D.
-0.9
stress
McCas_H2_complete sodium bromide 250 mM
-0.0
+2.2
N.D.
N.D.
-0.8
nutrient t2
H2 deepwell acetate and casamino FREE
-0.3
+2.0
N.D.
N.D.
-0.2
nutrient t2
H2 deepwell autotrophic conditions
+0.2
+1.6
N.D.
N.D.
-0.3
stress
McCas_H2_complete Lithium chloride 250 mM
-0.2
+2.1
N.D.
N.D.
-0.3
nutrient t2
H2 deepwell acetate FREE
+0.0
+1.9
N.D.
N.D.
-0.3
stress
McCas_H2_complete Calcium Chloride Dihydrate 83.3333333333333 mM
+0.4
+2.2
N.D.
N.D.
-0.7
nitrogen source
H2 N-free with 10mM NAG
-0.2
+1.1
N.D.
N.D.
+1.1
nitrogen source
H2 N-free with 10mM L-tyrosine
+0.2
+0.8
N.D.
N.D.
+1.2
stress
McCas_formate_complete Chloride 250 mM
+0.3
+1.2
N.D.
N.D.
+1.1
stress
McCas_H2_complete Chlorate 250 mM
+1.3
+1.7
N.D.
N.D.
-0.2
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