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Fitness for 5 genes in
Methanococcus maripaludis S2
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500 nt
MMP_RS00755 and MMP_RS00760 are separated by 49 nucleotides
MMP_RS00760 and MMP_RS00765 are separated by 72 nucleotides
MMP_RS00765 and MMP_RS00770 are separated by 49 nucleotides
MMP_RS00770 and MMP_RS00775 are separated by 270 nucleotides
MMP_RS00755: MMP_RS00755 - tyrosine decarboxylase MfnA, at 137,305 to 138,459
_RS00755
MMP_RS00760: MMP_RS00760 - branched-chain-amino-acid transaminase, at 138,509 to 139,372
_RS00760
MMP_RS00765: MMP_RS00765 - IMP dehydrogenase, at 139,445 to 140,947
_RS00765
MMP_RS00770: MMP_RS00770 - hypothetical protein, at 140,997 to 141,341
_RS00770
MMP_RS00775: MMP_RS00775 - threonine synthase, at 141,612 to 142,826
_RS00775
Group
Condition
MMP
_RS00755
MMP
_RS00760
MMP
_RS00765
MMP
_RS00770
MMP
_RS00775
nitrogen source
H2 N-free with 10mM L-Methionine
N.D.
-0.9
N.D.
-0.9
N.D.
nutrient t2
H2 deepwell acetate and casamino FREE
N.D.
-0.3
N.D.
-1.4
N.D.
nutrient t2
H2 deepwell autotrophic conditions
N.D.
-0.3
N.D.
-1.3
N.D.
nitrogen source
H2 N-free with 10mM L-Methionine
N.D.
-0.6
N.D.
-0.9
N.D.
nutrient t2
H2 deepwell casamino FREE
N.D.
-0.3
N.D.
-1.1
N.D.
nutrient t2
H2 deepwell casamino FREE
N.D.
-0.2
N.D.
-1.2
N.D.
mixed community
Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
N.D.
-0.3
N.D.
-1.0
N.D.
nitrogen source
H2 N-free with 10mM Gly-Glu
N.D.
-0.1
N.D.
-1.2
N.D.
nutrient t2
H2 deepwell autotrophic conditions
N.D.
+0.2
N.D.
-1.4
N.D.
nutrient t2
H2 deepwell autotrophic conditions
N.D.
-0.3
N.D.
-0.8
N.D.
nutrient t1
H2 deepwell autotrophic conditions
N.D.
-0.3
N.D.
-0.8
N.D.
nutrient t1
H2 deepwell acetate and casamino FREE
N.D.
-0.2
N.D.
-0.9
N.D.
nutrient t2
H2 deepwell acetate and casamino FREE
N.D.
+0.3
N.D.
-1.3
N.D.
nitrogen source
H2 N-free with 10mM Glycine
N.D.
+0.1
N.D.
-1.1
N.D.
stress
McCas_H2_complete Benzethonium chloride 0.00625 mM
N.D.
+0.3
N.D.
-0.9
N.D.
nitrogen source
H2 N-free with 10mM L-tyrosine
N.D.
+0.7
N.D.
-0.7
N.D.
stress
McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
N.D.
+1.2
N.D.
-0.7
N.D.
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
N.D.
-0.6
N.D.
+1.1
N.D.
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
N.D.
-0.3
N.D.
+0.8
N.D.
stress
McCas_formate_complete 3-nitroxypropanol 0.000416666666666667 mM
N.D.
+0.8
N.D.
-0.3
N.D.
stress
McCas_formate_complete 3-nitroxypropanol 0.00833333333333333 mM
N.D.
+1.0
N.D.
-0.4
N.D.
stress
McCas_H2_complete silver chloride 0.5 mM
N.D.
-0.3
N.D.
+1.0
N.D.
nutrient t2
H2 deepwell acetate and vitamin FREE
N.D.
-0.3
N.D.
+1.1
N.D.
stress
McCas_H2_complete Bacitracin 0.003125 mM
N.D.
+1.1
N.D.
-0.1
N.D.
nutrient t1
Mc formate, casamino free, with 10mM L-Threonine
N.D.
-0.0
N.D.
+1.2
N.D.
stress
McCas_H2_complete Chlorate 250 mM
N.D.
+0.3
N.D.
+1.0
N.D.
stress
McCas_H2_complete Irgasan 0.025 mM
N.D.
+0.6
N.D.
+0.8
N.D.
stress
McCas_formate_complete rubidium chloride 62.5 mM
N.D.
+0.1
N.D.
+1.2
N.D.
stress
McCas_formate_complete 3-nitroxypropanol 0.000416666666666667 mM
N.D.
+0.7
N.D.
+0.7
N.D.
stress
McCas_formate_complete hypophosphite 125 mM
N.D.
+0.6
N.D.
+1.0
N.D.
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